BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0124.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777867.1| AraC family xylose operon transcription regu... 711 0.0 ref|YP_004753804.1| Xylose activator XylR (AraC family) [Collimo... 700 0.0 ref|ZP_04588935.1| xylose operon regluatory protein [Pseudomonas... 581 e-164 ref|ZP_07774808.1| xylose operon regluatory protein [Pseudomonas... 579 e-163 ref|YP_004353892.1| xylose operon regulatory protein [Pseudomona... 579 e-163 >ref|YP_003777867.1| AraC family xylose operon transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65959.1| AraC family xylose operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 442 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/395 (85%), Positives = 362/395 (91%), Gaps = 2/395 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 V K PTVHRIALLFNGNKIFDR+IIAGIGEY+SSTRASWDLYLEEDFRCRPQGIERW GH Sbjct: 25 VAKAPTVHRIALLFNGNKIFDREIIAGIGEYISSTRASWDLYLEEDFRCRPQGIERWAGH 84 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP AL VQLPVVA+GGSYAD S YP + PYVATDN+K+VKLAYDHLIEA Sbjct: 85 GIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVATDNYKMVKLAYDHLIEA 144 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GLQ+FA FSLP++D NRWAQERE+ F LT DGI GH+YRGVGTSAQSWDTAVEQQIAW Sbjct: 145 GLQHFALFSLPESDCNRWAQERERIFTDLTGADGIAGHIYRGVGTSAQSWDTAVEQQIAW 204 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 VRSLPKP+GIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLAR+LTR+PLSSVIQ Sbjct: 205 VRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARVLTRIPLSSVIQ 264 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 G++EMGRTAAHLLHQML HGA+F D RI+VPP GINVLASSRHE RNHPHVMQA+HFIR Sbjct: 265 GSVEMGRTAAHLLHQML--HGARFPDTRIMVPPVGINVLASSRHEVRNHPHVMQALHFIR 322 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT+QVADYVG+SRSSL+WYFRRELGRSVHDEILRFKLDAA+R+L+QA + AE Sbjct: 323 QYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKLDAAKRLLEQAGSHAAE 382 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQLMQG 395 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQ G Sbjct: 383 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQFAAG 417 >ref|YP_004753804.1| Xylose activator XylR (AraC family) [Collimonas fungivorans Ter331] gb|AEK62981.1| Xylose activator XylR (AraC family) [Collimonas fungivorans Ter331] Length = 408 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/398 (86%), Positives = 364/398 (91%), Gaps = 4/398 (1%) Query: 6 TVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGHGIIAD 65 TVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDL+LEEDFRCR QGIERWQGHGIIAD Sbjct: 12 TVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLFLEEDFRCRLQGIERWQGHGIIAD 71 Query: 66 FDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEAGLQNF 125 FDDP ALSRV LPVVAVGGSYAD + YP D PYVATDNFKLVKLAYDHLIEAGLQ F Sbjct: 72 FDDPEACAALSRVSLPVVAVGGSYADAADYPGDTPYVATDNFKLVKLAYDHLIEAGLQRF 131 Query: 126 ACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAWVRSLP 185 ACFSLPQADVNRWAQEREKAFESL QRDG+QG +YRG+GTSA SWDTAVEQQIAW+++LP Sbjct: 132 ACFSLPQADVNRWAQEREKAFESLMQRDGMQGEIYRGLGTSAPSWDTAVEQQIAWLQTLP 191 Query: 186 KPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTLEM 245 KPIGIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGT EM Sbjct: 192 KPIGIIAVTDARARQLLQACLCAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQGTREM 251 Query: 246 GRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIRQYACQ 305 GRTAAHLLHQML HG + + RILVPPAGINVLASSRHEA +HPHVMQAMHFIRQYACQ Sbjct: 252 GRTAAHLLHQML--HGGRLAGTRILVPPAGINVLASSRHEAPSHPHVMQAMHFIRQYACQ 309 Query: 306 GIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQ-QAHGNVAEIAVS 364 GIKTEQVADYVGVSRSSL+WYFRRELGRSVHDEILRFKLD A+ MLQ + ++AEIAVS Sbjct: 310 GIKTEQVADYVGVSRSSLEWYFRRELGRSVHDEILRFKLDVAKDMLQHKDQRSIAEIAVS 369 Query: 365 CGFTSVQYMHAVFKRELGCTPREYQEQLMQGAAANPPS 402 CGFTSVQYMHAVFKRELGCTPREYQ++L Q A A P S Sbjct: 370 CGFTSVQYMHAVFKRELGCTPREYQDRLPQ-AEAGPLS 406 >ref|ZP_04588935.1| xylose operon regluatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI03390.1| xylose operon regluatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 398 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/390 (72%), Positives = 320/390 (82%), Gaps = 2/390 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + VP VHRIALLFNG+KI+DR II+GIG YLSSTR SWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ ++LPVVAVGGSY DE YPK +PYVATDN L+K AY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGIRLPVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQEREKAF L QRDG+ VYRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREKAFRRLLQRDGLHAEVYRGMGTSAPLWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 ++SLPKPIGIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG A + +IL+PP INV ASS H+ +P+VMQA+ FIR Sbjct: 241 GTETMGRTAARLLHQMLHGMPA--TGTQILIPPEAINVQASSLHQPLGNPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT QVA YVGVSRSSL+ +FR+ G SVHDEILRFKL AA L++ +AE Sbjct: 299 QYACQGIKTAQVAAYVGVSRSSLESHFRKVRGCSVHDEILRFKLAAAASGLEKTDSAIAE 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQE 390 IA +CGF S QY+H VF+RE GCTPREYQ+ Sbjct: 359 IARNCGFKSAQYLHTVFRREFGCTPREYQQ 388 >ref|ZP_07774808.1| xylose operon regluatory protein [Pseudomonas fluorescens WH6] gb|EFQ64089.1| xylose operon regluatory protein [Pseudomonas fluorescens WH6] Length = 393 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 289/399 (72%), Positives = 323/399 (80%), Gaps = 6/399 (1%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + +P VHRIALLFNG+KI+DR IIAGIG YLSSTRASWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTLPPVHRIALLFNGSKIYDRGIIAGIGNYLSSTRASWDLFLEEDFLCRLRGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ QLPVVAVGGSY D YP+ +PYVATDN+ L+KLAY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGSQLPVVAVGGSYEDARAYPQGIPYVATDNYGLMKLAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQEREKAF L QRDG+Q +YRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREKAFRHLMQRDGLQVQIYRGLGTSAPMWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 + SLPKPIGIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LESLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG + +ILVPP INV ASS H+ +P+VMQA+ FIR Sbjct: 241 GTETMGRTAAALLHQMLHGKPC--TGAQILVPPEAINVQASSLHQPLGNPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT+QVA YVGVSRSSL+ +FR+ G SVHDEILRFKL AA LQ +A+ Sbjct: 299 QYACQGIKTDQVAAYVGVSRSSLESHFRKVRGCSVHDEILRFKLAAAANGLQHGDLAIAD 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQLMQGAAAN 399 IA CGF S QY+H VF+RE GCTPREYQ QGAA + Sbjct: 359 IAQQCGFKSAQYLHTVFRREFGCTPREYQ----QGAACH 393 >ref|YP_004353892.1| xylose operon regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68888.1| Putative Xylose operon regulatory protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 395 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 282/390 (72%), Positives = 321/390 (82%), Gaps = 2/390 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + VP VHRIALLFNG+KI+DR II+GIG YLSSTRASWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ ++LPVVAVGGSY DE YPK +PYVATDN L+ LAY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGIKLPVVAVGGSYQDERAYPKGIPYVATDNDALMTLAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQEREKAF L QRDG+ VYRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREKAFRRLVQRDGLHAEVYRGMGTSAPLWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 ++SLPKPIGIIAV+DARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG + + +IL+PP INV SS H+ +P+VMQA+ FIR Sbjct: 241 GTETMGRTAARLLHQMLHGMPS--TGTQILIPPDAINVQVSSLHQPLGNPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT QVA YVGVSRSSL+ +FR+E G SVHDEILRFKL AA L+ + +A+ Sbjct: 299 QYACQGIKTAQVAAYVGVSRSSLESHFRKERGCSVHDEILRFKLAAAANGLENTNSPIAD 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQE 390 IA +CGF S QY+H VF+RE GCTPREYQ+ Sbjct: 359 IAQNCGFKSAQYLHTVFRREFGCTPREYQQ 388