BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0097.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004680654.1| hypothetical protein CNE_2c04410 [Cupriavidu...    86   2e-15
ref|YP_728654.1| hypothetical protein H16_B0492 [Ralstonia eutro...    84   1e-14
ref|ZP_02885492.1| conserved hypothetical protein [Burkholderia ...    80   7e-14
gb|EGD01387.1| hypothetical protein B1M_26827 [Burkholderia sp. ...    74   9e-12
ref|YP_001777466.1| hypothetical protein Bcenmc03_3825 [Burkhold...    70   1e-10

>ref|YP_004680654.1| hypothetical protein CNE_2c04410 [Cupriavidus necator N-1]
 gb|AEI79422.1| hypothetical protein CNE_2c04410 [Cupriavidus necator N-1]
          Length = 193

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%)

Query: 3   NGRIEQLPWLVLMREEETASLRIGRGYYNWQLNQHPEELWRASEMHIRIDHMMLIADVAG 62
           +G    +PWLV+MRE   ++LR+G+GYY W      +  +R + +HI I+ +  IAD   
Sbjct: 87  DGNAMTIPWLVVMRETAASALRVGKGYYRWGFAAGDDGTYRIASLHIHIERIDTIADPGA 146

Query: 63  DLLTTLHSFLPYPWLPPRVLDSSFGFIGDSSPAFAFLKEF 102
             L  L + LPYPWLP  VL +S      + PA  FL  F
Sbjct: 147 VTLAALQAALPYPWLPAPVLAASIEAQASAQPALGFLNVF 186


>ref|YP_728654.1| hypothetical protein H16_B0492 [Ralstonia eutropha H16]
 emb|CAJ95289.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 193

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 55/100 (55%)

Query: 3   NGRIEQLPWLVLMREEETASLRIGRGYYNWQLNQHPEELWRASEMHIRIDHMMLIADVAG 62
           +G    +PWLV+MRE   ++LR+G+G+Y W      +  +R + +HI I+ M  IAD   
Sbjct: 87  DGNAMTIPWLVVMRETAASALRVGKGHYRWGFAAGDDGTYRIASLHIHIERMDTIADPGA 146

Query: 63  DLLTTLHSFLPYPWLPPRVLDSSFGFIGDSSPAFAFLKEF 102
             L  L + LPYPWLP  VL ++      + PA  FL  F
Sbjct: 147 VTLAALQAALPYPWLPAPVLAAAIEAHTGAQPALGFLNVF 186


>ref|ZP_02885492.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT08935.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 191

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 1   VSNGRIEQLPWLVLMREEETASLRIGRGYYNWQLNQHPEELWRASEMHIRIDHMMLIADV 60
           V +G I+ LPWLVLMRE    +LR+G G Y W  +  P      S  HI I  M ++ D 
Sbjct: 85  VRDGAIDPLPWLVLMREPAAGALRVGHGVYRWTFDDTPA----VSRFHIHIARMDVVPDA 140

Query: 61  AGDLLTTLHSFLPYPWLPPRVLDSSFGFIGDSSPAFAFLKEFRSNKFD 108
            G LL  L   L YPWL P  L + F     S+P  AF++ F     D
Sbjct: 141 DGALLEALQEGLSYPWLAPAELHARFAGHARSAPRLAFVEAFSRPAAD 188


>gb|EGD01387.1| hypothetical protein B1M_26827 [Burkholderia sp. TJI49]
          Length = 196

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%)

Query: 1   VSNGRIEQLPWLVLMREEETASLRIGRGYYNWQLNQHPEELWRASEMHIRIDHMMLIADV 60
           V    +  +PWLV MR++++ +LRIG G Y W+       + R + +HI I  M  I D 
Sbjct: 86  VDEAGVSAMPWLVAMRQKDSGALRIGHGAYRWRFASDANGIGRIAALHIHIARMDTIDDP 145

Query: 61  AGDLLTTLHSFLPYPWLPPRVLDSSFGFIGDSSPAFAFLKEFR 103
            G  L  LH+   YPWLPP+ L   F  +  + P + F+  FR
Sbjct: 146 NGAKLAALHAAFGYPWLPPQALARGFAALAAAHPDWTFVAPFR 188


>ref|YP_001777466.1| hypothetical protein Bcenmc03_3825 [Burkholderia cenocepacia MC0-3]
 gb|ACA92976.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 198

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 1   VSNGRIEQLPWLVLMREEETASLRIGRGYYNWQ--LNQHPEELWRASEMHIRIDHMMLIA 58
           V    +  +PWLV+MR++++ +LRIG G Y W+  ++   +++ R + +HI I  M  I 
Sbjct: 86  VDEHGVSSMPWLVVMRQKDSGALRIGHGTYRWRFAIDGENDDVARVAALHIHIARMDTIG 145

Query: 59  DVAGDLLTTLHSFLPYPWLPPRVLDSSFGFIGDSSPAFAFLKEFR 103
           D     L  LH+   YPWLP          I  + P +AFL  F+
Sbjct: 146 DPQSLKLDRLHAAFGYPWLPVHAFARGLADIAAAHPDWAFLAPFQ 190