BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0060.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777005.1| LytR/AlgR family two component response regu...   166   1e-39
ref|ZP_08871857.1| response regulator receiver protein, partial ...   162   2e-38
ref|YP_004751810.1| response regulator receiver protein [Collimo...   159   2e-37
ref|YP_997048.1| response regulator receiver protein [Verminephr...   158   3e-37
ref|YP_004127678.1| lyttr DNA-binding region protein [Alicycliph...   155   2e-36

>ref|YP_003777005.1| LytR/AlgR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ65097.1| LytR/AlgR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 108/144 (75%), Gaps = 4/144 (2%)

Query: 10  ALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQSG 69
           ALIAEDE LLA  L   LQR WP L+   + +NG+ A+E AL   PDVLFLDIRMPG SG
Sbjct: 5   ALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMPGHSG 64

Query: 70  LEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQT 129
           LE ARELA++WP ++PFPL+VFVTAYD++A++AFE+AAIDY+LKP N+ERL  TV RL+ 
Sbjct: 65  LEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQRLRA 124

Query: 130 ----RLKNTNDQGLEQVLAQLXQV 149
               R  ++ +  LEQ LAQL Q+
Sbjct: 125 LLAQRAASSQELHLEQALAQLRQL 148


>ref|ZP_08871857.1| response regulator receiver protein, partial [Verminephrobacter sp.
           At4]
          Length = 223

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 7/150 (4%)

Query: 4   TPPPARALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIR 63
           TPP ARALIAEDE LLA  L  +L R WP L I   VS+G++AV QALAL+PDVLFLDIR
Sbjct: 2   TPPTARALIAEDEPLLAAALQQELARAWPDLQIVASVSDGLSAVRQALALRPDVLFLDIR 61

Query: 64  MPGQSGLEAARELADEWPH--QRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLA 121
           MPGQSGL+AA +LAD WP    RPFP LVFV+AY+ YA+QAFE  A+DY+LKP    RL 
Sbjct: 62  MPGQSGLDAAVQLADAWPDPAARPFPALVFVSAYEQYAVQAFEAQAMDYLLKPVQTARLQ 121

Query: 122 LTVARLQTRLKN-----TNDQGLEQVLAQL 146
            TV RL+  L N     +N   LE  +AQL
Sbjct: 122 GTVQRLRHALVNRMPRASNAIDLEATMAQL 151


>ref|YP_004751810.1| response regulator receiver protein [Collimonas fungivorans Ter331]
 gb|AEK60987.1| response regulator receiver protein [Collimonas fungivorans Ter331]
          Length = 264

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 102/140 (72%), Gaps = 2/140 (1%)

Query: 9   RALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQS 68
           RALIAEDE +LA  L   LQRLWP L I   V NG A VEQ L  +PD+LFLDI+MPG++
Sbjct: 8   RALIAEDEPILAAALQQALQRLWPELQIIASVDNGQAVVEQTLRQRPDILFLDIKMPGKT 67

Query: 69  GLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           GLEAA+ELA+EWP    FPL+VFVTAYD+YA+ AFE AA DYVLKP +D RL  T+ARLQ
Sbjct: 68  GLEAAQELAEEWPENEAFPLIVFVTAYDEYAVSAFEHAAADYVLKPISDARLGKTIARLQ 127

Query: 129 TRLKNTNDQG--LEQVLAQL 146
            RL+   D    L+ ++ QL
Sbjct: 128 QRLQQNGDGNGALDNLIGQL 147


>ref|YP_997048.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
 gb|ABM58030.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 276

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 101/147 (68%), Gaps = 6/147 (4%)

Query: 6   PPARALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMP 65
           P  RALIAEDE LLA  L  +L R WPGL I   V +G++AV QALALQP++LF DIRMP
Sbjct: 4   PAPRALIAEDEPLLAAALQQELSRAWPGLQIVATVGDGLSAVRQALALQPELLFFDIRMP 63

Query: 66  GQSGLEAARELADEW----PHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLA 121
           GQSGL+AA ELA++W    P  RPFP LVFVTAYD YA+QAFE  AIDY+LKP    RL 
Sbjct: 64  GQSGLDAAVELAEDWPGTGPSARPFPALVFVTAYDQYAVQAFEAQAIDYLLKPIQPARLQ 123

Query: 122 LTVARLQTRLKNTNDQG--LEQVLAQL 146
            TV +LQ  L N       LE  +AQL
Sbjct: 124 KTVQKLQQALANHAPYAIDLEATMAQL 150


>ref|YP_004127678.1| lyttr DNA-binding region protein [Alicycliphilus denitrificans BC]
 gb|ADV00791.1| LytTr DNA-binding region protein [Alicycliphilus denitrificans BC]
          Length = 268

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 99/141 (70%), Gaps = 1/141 (0%)

Query: 10  ALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQSG 69
           ALIAEDE LLA  L  +L R WPGL IA  V +G++AV +AL L PDVLF DIRMPGQSG
Sbjct: 5   ALIAEDEPLLAAALQQELARAWPGLAIAATVGDGLSAVREALRLMPDVLFFDIRMPGQSG 64

Query: 70  LEAARELADEW-PHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           L+AA ELAD W    RPFP LVFVTAYD YA+QAFE  A+DY+LKP    RL  TV +L+
Sbjct: 65  LDAAVELADAWDTGARPFPALVFVTAYDQYAVQAFEAQAVDYLLKPVQPGRLDRTVHKLR 124

Query: 129 TRLKNTNDQGLEQVLAQLXQV 149
             L+      LEQ LAQL ++
Sbjct: 125 QALQQRASPALEQTLAQLREL 145