BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0041.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752102.1| porin [Collimonas fungivorans Ter331] >gi|34... 436 e-120 ref|YP_004751966.1| putative porin signal peptide protein [Colli... 383 e-104 ref|YP_004752017.1| putative porin signal peptide protein [Colli... 376 e-102 ref|ZP_04523192.1| putative outer membrane porin [Burkholderia p... 372 e-101 ref|ZP_01765775.1| porin protein [Burkholderia pseudomallei 305]... 372 e-101 >ref|YP_004752102.1| porin [Collimonas fungivorans Ter331] gb|AEK61279.1| porin, Gram-negative type [Collimonas fungivorans Ter331] Length = 378 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/362 (61%), Positives = 276/362 (76%), Gaps = 22/362 (6%) Query: 24 CASAQAQTNVTVYGRIDAGINYQSNQAGANG----SRGSKWGIDGNEWGTSMFGFKGTED 79 AQAQTNVT+YGR+DAGINYQSNQ N +RG +WGI GNEWGTSMFG KGTED Sbjct: 26 VGQAQAQTNVTIYGRVDAGINYQSNQVNKNADGSITRGGQWGIGGNEWGTSMFGIKGTED 85 Query: 80 LGGGLKAIFTIESGFDASNGSVNSSSSNPGILWSRRSFVGLSGSAGTLKVGKDLAIQSDP 139 LGGGLKA+FT+E+GFDASNG VN S LW+RRSFVGL+GS GT+K+G+DLA+ SD Sbjct: 86 LGGGLKALFTLENGFDASNGQVNGGSG----LWTRRSFVGLNGSLGTVKIGRDLALPSDR 141 Query: 140 IWALDPTGQQALSTATLVKERNWPQTNNMVSYESPNFGGFTATVMHGFGEAAGSFTKGVP 199 +W++DPTGQQ +ST+TL K RNWPQT+N + Y +P+ GG VM+G GEAAGSFT+G P Sbjct: 142 VWSIDPTGQQNMSTSTLFKGRNWPQTSNQIQYITPDMGGLYVHVMYGAGEAAGSFTRG-P 200 Query: 200 TATGVVSNNGSRDGISLAYVQPTYELRAIYDVQRDTNGQYSTLFNSSKELTLGGTLTIDK 259 T SN G+ GI++ +VQPTYEL A+YD R +G+Y+ LF+ SKE+T+GG +T Sbjct: 201 TG----SNIGNSTGIAVGFVQPTYELLAMYDTARSQSGEYNDLFSRSKEITVGGNVTFGP 256 Query: 260 LKLFAGYENLRANSVAT--------GNPDRANHYWLGANYQITPALTLIGAAYHVNVNAG 311 KLFAG++N+ A + T + ++AN +WLGANYQ+TPALTLIGAAYHV +N Sbjct: 257 AKLFAGWQNISAPAQDTSTAVAGSMASANKANQFWLGANYQVTPALTLIGAAYHVKLNHD 316 Query: 312 VGSANLFVLGGNYSLSKRTLLYATVGTVRNGANSDFSVEYGGG-GIKGQNQQAFYTGISH 370 VGSANLF++G NYSLSKRTLLYA+VGT+RNG+N+DF V+ G G+ GQNQ FYTGISH Sbjct: 317 VGSANLFMVGTNYSLSKRTLLYASVGTIRNGSNTDFQVQTGSSDGLVGQNQSTFYTGISH 376 Query: 371 SF 372 SF Sbjct: 377 SF 378 >ref|YP_004751966.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61143.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 357 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/374 (55%), Positives = 260/374 (69%), Gaps = 28/374 (7%) Query: 9 FIAKPLAIAAVM---AGACASAQAQTNVTVYGRIDAGINYQSNQA--GANGSR----GSK 59 ++K A A+++ A A AQAQTNVT+YGR+DAGI++QS A ANG++ GSK Sbjct: 2 ILSKTFAAASLLGLVAVASGQAQAQTNVTIYGRVDAGIDFQSGVALKDANGNQTGATGSK 61 Query: 60 WGIDGNEWGTSMFGFKGTEDLGGGLKAIFTIESGFDASNGSVNSSSSNPGILWSRRSFVG 119 +G GN+WGTSMFGFKGTEDLGGGL A F +ESGF+A G N S+ L++RRS+VG Sbjct: 62 FGTSGNQWGTSMFGFKGTEDLGGGLGAFFLLESGFNAPTGQTNGSA-----LFNRRSYVG 116 Query: 120 LSGSAGTLKVGKDLAIQSDPIWALDPTGQQALSTATLVKERNWPQTNNMVSYESPNFGGF 179 LSGSAG++K GK+L I +D +W LDPTGQQ + TA LVK RNWP NN++ Y++P + GF Sbjct: 117 LSGSAGSIKFGKNLFIVND-VWYLDPTGQQFIGTANLVKGRNWPGANNVIEYQTPTWSGF 175 Query: 180 TATVMHGFGEAAGSFTKGVPTATGVVSNNGSRDGISLAYVQPTYELRAIYDVQRDTNGQY 239 ATV GE AGS + NG DG+SL Y ELRAIYDV RD NG+Y Sbjct: 176 NATVQTSLGEQAGS------------TRNGRSDGVSLVYTNAGLELRAIYDVIRDVNGKY 223 Query: 240 STLFNSSKELTLGGTLTIDKLKLFAGYENLRANSVATGNPDRANHYWLGANYQITPALTL 299 S ++ +SK+L +GGT TI+ LKLFA YEN+ A G+PD+ HYW+GANY +TPALTL Sbjct: 224 SDIYAASKDLIVGGTYTINALKLFAAYENVSAPDSVAGSPDKIQHYWIGANYVLTPALTL 283 Query: 300 IGAAYHVNVNAGVGSANLFVLGGNYSLSKRTLLYATVGTVRNGANSDFSVEYGGGG-IKG 358 IG A+H +N GS NLF+LG NY+LSKRTLLYA+VGTVRN N+DFSVE G + G Sbjct: 284 IGGAFHAKLNNDGGSGNLFMLGANYNLSKRTLLYASVGTVRNKGNADFSVEMSGDNPLAG 343 Query: 359 QNQQAFYTGISHSF 372 +Q Y G+SHSF Sbjct: 344 HSQNGGYLGVSHSF 357 >ref|YP_004752017.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61194.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 343 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/361 (54%), Positives = 250/361 (69%), Gaps = 26/361 (7%) Query: 19 VMAGACASAQAQTNVTVYGRIDAGINYQSNQA------GANGSRGSKWGIDGNEWGTSMF 72 ++ AC+ AQAQT+VT+YGR+DAGI+YQS+ A G G K GN+WGTSM Sbjct: 2 LIGAACSQAQAQTSVTIYGRVDAGIDYQSSVALKDANGKPTGQTGGKLAASGNQWGTSMI 61 Query: 73 GFKGTEDLGGGLKAIFTIESGFDASNGSVNSSSSNPGILWSRRSFVGLSGSAGTLKVGKD 132 GFKGTEDLGGGL A F +ESGFDA+ G N S+ L++RRS+VGL+G AG++K GK+ Sbjct: 62 GFKGTEDLGGGLGAFFLLESGFDATKGVTNGSA-----LFNRRSYVGLNGGAGSIKFGKN 116 Query: 133 LAIQSDPIWALDPTGQQALSTATLVKERNWPQTNNMVSYESPNFGGFTATVMHGFGEAAG 192 L I +D +W LDPTGQQ + TA+LVK RNWP NN++ Y++P + GF AT GE AG Sbjct: 117 LFIVND-VWYLDPTGQQFMGTASLVKGRNWPGANNVIEYQTPTWSGFNATAQTSLGEQAG 175 Query: 193 SFTKGVPTATGVVSNNGSRDGISLAYVQPTYELRAIYDVQRDTNGQYSTLFNSSKELTLG 252 S + NG DGISL Y ELR IYDV RDTNG+Y+ ++ +SK+L +G Sbjct: 176 S------------AKNGRSDGISLVYTNGGLELRGIYDVIRDTNGRYTDIYTASKDLIVG 223 Query: 253 GTLTIDKLKLFAGYENLRA-NSVATGNPDRANHYWLGANYQITPALTLIGAAYHVNVNAG 311 GT TIDKLKL+AGYEN+ A ++ A +PD+ NHYW+GANY +TPALTLIG A+H +N Sbjct: 224 GTYTIDKLKLYAGYENISAPDTAAPSDPDKLNHYWIGANYMLTPALTLIGGAFHAKINHD 283 Query: 312 VGSANLFVLGGNYSLSKRTLLYATVGTVRNGANSDFSVEYGGGGIKGQNQQAFYTGISHS 371 GSA+LF++G NY+LSKRTLLYA VGTVRN N+DF E+ + G Q Y GISH+ Sbjct: 284 AGSASLFMVGANYNLSKRTLLYAAVGTVRNKGNADFGTEF-DSPLPGHAQNGGYAGISHT 342 Query: 372 F 372 F Sbjct: 343 F 343 >ref|ZP_04523192.1| putative outer membrane porin [Burkholderia pseudomallei MSHR346] ref|ZP_04889751.1| porin, Gram-negative type [Burkholderia pseudomallei 1655] gb|EDU10735.1| porin, Gram-negative type [Burkholderia pseudomallei 1655] gb|EEP52106.1| putative outer membrane porin [Burkholderia pseudomallei MSHR346] Length = 347 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/366 (55%), Positives = 251/366 (68%), Gaps = 21/366 (5%) Query: 9 FIAKPLAIAAVMAGACASAQAQTNVTVYGRIDAGINYQSNQAGANGSRGSKWGIDGNEWG 68 + K L + +++ A A AQ +VT+YGR+ AG+++Q+N A+GS GS N+WG Sbjct: 1 MVKKTLLMVSLLTFGMA-AHAQNSVTLYGRVVAGVDFQNNVQNADGSSGSLLRAGDNQWG 59 Query: 69 TSMFGFKGTEDLGGGLKAIFTIESGFDASNGSVNSSSSNPGILWSRRSFVGL-SGSAGTL 127 TSMFGF GTEDLGGGLKA+F +ESGF +S G+ N ++ L++RRSFV L S + G L Sbjct: 60 TSMFGFTGTEDLGGGLKALFKLESGFGSSAGATNGTA-----LFNRRSFVALQSATWGQL 114 Query: 128 KVGKDLAIQSDPIWALDPTGQQALSTATLVKERNWPQTNNMVSYESPNFGGFTATVMHGF 187 K+G DLAI +D IWALDPTGQQ + +ATLV+ RNW NNM++YE+PN+GGF+ V+ Sbjct: 115 KLGNDLAI-ADQIWALDPTGQQFIGSATLVRGRNWQGDNNMIAYETPNWGGFSGLVLTSL 173 Query: 188 GEAAGSFTKGVPTATGVVSNNGSRDGISLAYVQPTYELRAIYDVQRDTNGQYSTLFNSSK 247 G AGS N+ +D ISL Y T+ELRAIYDV RD NG+YS LFN+S+ Sbjct: 174 GGKAGSL------------NSSRKDAISLTYTARTFELRAIYDVARDKNGKYSDLFNASR 221 Query: 248 ELTLGGTLTIDKLKLFAGYENLRANSVATGNPDRANHYWLGANYQITPALTLIGAAYHVN 307 ELTLGGT T LKL+A YENL A G P +ANHYWLG NYQ+TP LTLIGAAY VN Sbjct: 222 ELTLGGTATFSALKLYAAYENLSAPDSVAGAPTKANHYWLGVNYQLTPFLTLIGAAYRVN 281 Query: 308 VNAGVGSANLFVLGGNYSLSKRTLLYATVGTVRNGANSDFSVE-YGGGGIKGQNQQAFYT 366 VN G+ANLF+LG NYSLSK+TLLY + GTVRN N++FSVE G Q FY Sbjct: 282 VNHNGGNANLFMLGANYSLSKQTLLYVSAGTVRNSPNANFSVEATNNNPAPGGKQAGFYA 341 Query: 367 GISHSF 372 GISHSF Sbjct: 342 GISHSF 347 >ref|ZP_01765775.1| porin protein [Burkholderia pseudomallei 305] gb|EBA49562.1| porin protein [Burkholderia pseudomallei 305] Length = 347 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/366 (55%), Positives = 251/366 (68%), Gaps = 21/366 (5%) Query: 9 FIAKPLAIAAVMAGACASAQAQTNVTVYGRIDAGINYQSNQAGANGSRGSKWGIDGNEWG 68 + K L + +++ A A AQ +VT+YGR+ AG+++Q+N A+GS GS N+WG Sbjct: 1 MVKKTLLMVSLLTFGMA-AHAQNSVTLYGRVVAGVDFQNNVQNADGSSGSLLRAGDNQWG 59 Query: 69 TSMFGFKGTEDLGGGLKAIFTIESGFDASNGSVNSSSSNPGILWSRRSFVGL-SGSAGTL 127 TSMFGF GTEDLGGGLKA+F +ESGF +S G+ N ++ L++RRSFV L S + G L Sbjct: 60 TSMFGFTGTEDLGGGLKALFKLESGFGSSAGATNGTA-----LFNRRSFVALQSATWGQL 114 Query: 128 KVGKDLAIQSDPIWALDPTGQQALSTATLVKERNWPQTNNMVSYESPNFGGFTATVMHGF 187 K+G DLAI +D IWALDPTGQQ + +ATLV+ RNW NNM++YE+PN+GGF+ V+ Sbjct: 115 KLGNDLAI-ADQIWALDPTGQQFIGSATLVRGRNWQGDNNMIAYETPNWGGFSGLVLTSL 173 Query: 188 GEAAGSFTKGVPTATGVVSNNGSRDGISLAYVQPTYELRAIYDVQRDTNGQYSTLFNSSK 247 G AGS N+ +D ISL Y +ELRAIYDV RD NG+YS LFN+S+ Sbjct: 174 GGKAGSL------------NSSRKDAISLTYTARPFELRAIYDVARDKNGKYSDLFNASR 221 Query: 248 ELTLGGTLTIDKLKLFAGYENLRANSVATGNPDRANHYWLGANYQITPALTLIGAAYHVN 307 ELTLGGT T LKL+A YENL A G P +ANHYWLG NYQ+TP LTLIGAAY VN Sbjct: 222 ELTLGGTATFSALKLYAAYENLSAPDSVAGAPTKANHYWLGVNYQLTPFLTLIGAAYRVN 281 Query: 308 VNAGVGSANLFVLGGNYSLSKRTLLYATVGTVRNGANSDFSVE-YGGGGIKGQNQQAFYT 366 VN G+ANLF+LG NYSLSK+TLLY + GTVRNG N++FSVE G Q FY Sbjct: 282 VNHNGGNANLFMLGANYSLSKQTLLYVSAGTVRNGPNANFSVEATNNNPAPGGKQAGFYA 341 Query: 367 GISHSF 372 GISHSF Sbjct: 342 GISHSF 347