BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0037.p (860 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751680.1| RNA polymerase sigma factor [Collimonas fung... 1322 0.0 ref|YP_001098788.1| putative sigma 70 factor of RNA polymerase [... 1310 0.0 emb|CAL60659.2| putative RNA polymerase sigma factor rpoD (Sigma... 1301 0.0 ref|YP_003774296.1| RNA polymerase sigma-70 factor transcription... 1291 0.0 ref|YP_001352183.1| RNA polymerase primary sigma factor [Janthin... 1288 0.0 >ref|YP_004751680.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK60857.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 831 Score = 1322 bits (3422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 709/864 (82%), Positives = 747/864 (86%), Gaps = 42/864 (4%) Query: 1 MADAMKKTAKTPTPSAKNTKPAVKPASKSTPVSRSVPKKTAAAKPTGKATATAVRATSSP 60 MA+AMK+ AK+ T S K K AAAK ++++ ++ Sbjct: 6 MANAMKRPAKSLTLSVK---------------------KPAAAKANVSTSSSSSKSPVKK 44 Query: 61 AKAASTASAKKSSAKPASTAVRAAVPVVAKATTKAAATPTKKNLSQASIKPASVQSKASV 120 A+S A AK PV K +KA AT TK + + A KP SV+SKA V Sbjct: 45 TAASSKAPAK---------------PVSKKVVSKATATTTKASRTVA--KPVSVKSKAPV 87 Query: 121 TTKKPEPKTAKPAAKAAVKSEVKDVSVMIAPGVSQTTDAAALAAIDTSGYILPSVKVPGR 180 T KKP+ K K + AA DVSVMI GVSQTTDAA LAAIDTSGYILPSVKVPGR Sbjct: 88 TIKKPQLKVVKSSKNAAPAPVKADVSVMIGSGVSQTTDAATLAAIDTSGYILPSVKVPGR 147 Query: 181 RGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEEEL 240 RGRKPKEFQPENDE+AALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEA+EEEL Sbjct: 148 RGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEEL 207 Query: 241 ERRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAIEGIIGTFNDMGISVYEHAPDA 300 E RRQKLKTLIK GKERG+LTFSEINDHLPENI+DPEAIEGIIGTF+DMGI+VYE APDA Sbjct: 208 EARRQKLKTLIKMGKERGFLTFSEINDHLPENIIDPEAIEGIIGTFSDMGIAVYEQAPDA 267 Query: 301 ETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIE 360 ETLLLSDNVA VASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIE Sbjct: 268 ETLLLSDNVATVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIE 327 Query: 361 IAKRIEDGLKDMIQAISACPTTIAEILVAADKISKDEIKVDEIVDGLVDMSEGEVVVAAA 420 IAKRIEDGLKDMIQAISACPTTIAEIL+AADKI KDEIK+DEIVDGLVD ++ + A+ Sbjct: 328 IAKRIEDGLKDMIQAISACPTTIAEILLAADKIGKDEIKIDEIVDGLVDPNQTDEAATAS 387 Query: 421 SDEEDEEDDEEDGEEEEEEGESSN----TGGAAGFSAEQLEQLKRDALGKFATISTQFDN 476 + ++D +D EEEEEE + T GAAGFSAEQLEQLKRDALGKF TISTQFD Sbjct: 388 AAATAADEDSDDEEEEEEEDAEEDDASSTSGAAGFSAEQLEQLKRDALGKFETISTQFDK 447 Query: 477 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRAQVDEVRQIERQILDV 536 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLR QVDEVRQIERQILDV Sbjct: 448 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIERQILDV 507 Query: 537 AVNKCNMPRAHFIKVFPGNESNLDWVDGEVNGNHAYSVVLARNVPAIKELQQKLIDLQAR 596 AVNKC MPR HFIKVFPGNE+NLDWVDGEV+GNHAYS VL+RNVPA+KELQQ+LIDLQAR Sbjct: 508 AVNKCGMPRPHFIKVFPGNETNLDWVDGEVSGNHAYSTVLSRNVPAVKELQQRLIDLQAR 567 Query: 597 VVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 656 VVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 568 VVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 627 Query: 657 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 716 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI Sbjct: 628 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 687 Query: 717 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 776 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA Sbjct: 688 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 747 Query: 777 PADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 836 PADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI Sbjct: 748 PADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 807 Query: 837 EAKALRKLRHPSRSDKLKSFLEGN 860 EAKALRKLRHPSRSDKLKSFLEGN Sbjct: 808 EAKALRKLRHPSRSDKLKSFLEGN 831 >ref|YP_001098788.1| putative sigma 70 factor of RNA polymerase [Herminiimonas arsenicoxydans] Length = 858 Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 694/864 (80%), Positives = 749/864 (86%), Gaps = 35/864 (4%) Query: 1 MADAMKKTAKTPTPSAKNTKPAVKPASKSTPVSRSVPKKTAAAKPTGKATATA-VRATSS 59 MA+AMKK AK +A + A ++K PV++ V ++A GKA +++ V+A S Sbjct: 26 MANAMKKPAKNQILAASKAETAAAKSTK--PVAKKVASQSA-----GKAVSSSNVKAVKS 78 Query: 60 PAKAASTASAKKSSAKPASTAVRAAVPVVAKATTKAAATPTKKNLSQASIKPASVQSKAS 119 P KA P TA A AK ++K AA KP SVQSKA Sbjct: 79 PTKA------------PTKTATLVAKSAAAKPSSKVAA------------KPVSVQSKAP 114 Query: 120 VTTKKPEPKTAKPAAKAAVKSEVK-DVSVMIAPGVSQTTDAAALAAIDTSGYILPSVKVP 178 VT KK E K+ +AK K E + V+VMI P VSQTTDAA LAAIDTSGYILPS+KVP Sbjct: 115 VTNKKSEVKSTSKSAKVEPKVESRPGVNVMITPTVSQTTDAATLAAIDTSGYILPSIKVP 174 Query: 179 GRRGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEE 238 GRRGRKPKEFQPENDE+AALNAVERAELKAVDKAKAKDRKAKEKALLKDAFS+DTEA+EE Sbjct: 175 GRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSNDTEASEE 234 Query: 239 ELERRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAIEGIIGTFNDMGISVYEHAP 298 ELE RRQKLKTLIK GKERG+LT++EINDHLPENI+DPEAIEGIIGTFNDMGI+VYE AP Sbjct: 235 ELEARRQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQAP 294 Query: 299 DAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE 358 DAETLLLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE Sbjct: 295 DAETLLLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE 354 Query: 359 IEIAKRIEDGLKDMIQAISACPTTIAEILVAADKISKDEIKVDEIVDGLVDMSEGEVVVA 418 I+IAKRIEDGL+DMIQAISACPTTIAEI+ AA++ISKDE K+DEIVDGLVDM+ E V+A Sbjct: 355 IDIAKRIEDGLRDMIQAISACPTTIAEIMAAAERISKDEAKIDEIVDGLVDMNASEPVIA 414 Query: 419 AASDE--EDEEDDEEDGEEEEEEGESSNTGGAAGFSAEQLEQLKRDALGKFATISTQFDN 476 + DEE++EE+ EE EEE E+ GAAGFS+EQLEQLKRD+L KF+TI+ QFD Sbjct: 415 PPAPAAASDEEEEEEEEEEAEEEEETPAASGAAGFSSEQLEQLKRDSLAKFSTIAMQFDK 474 Query: 477 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRAQVDEVRQIERQILDV 536 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLR QVDEVRQIE+QILD+ Sbjct: 475 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIEKQILDI 534 Query: 537 AVNKCNMPRAHFIKVFPGNESNLDWVDGEVNGNHAYSVVLARNVPAIKELQQKLIDLQAR 596 AVN+C MPR HFIKVFPGNE+NLDWVDGEV GNH YS+VLARNVPA+KELQQKLIDLQAR Sbjct: 535 AVNRCEMPRNHFIKVFPGNETNLDWVDGEVEGNHPYSIVLARNVPAVKELQQKLIDLQAR 594 Query: 597 VVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 656 VVLPLPDLR IN+KM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 595 VVLPLPDLRAINRKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 654 Query: 657 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 716 GLMKAVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI Sbjct: 655 GLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 714 Query: 717 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 776 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA Sbjct: 715 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 774 Query: 777 PADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 836 PADAALHASMRGVVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI Sbjct: 775 PADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 834 Query: 837 EAKALRKLRHPSRSDKLKSFLEGN 860 EAKALRKLRHPSRSDKLKSFLEGN Sbjct: 835 EAKALRKLRHPSRSDKLKSFLEGN 858 >emb|CAL60659.2| putative RNA polymerase sigma factor rpoD (Sigma-70) [Herminiimonas arsenicoxydans] Length = 800 Score = 1301 bits (3366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 680/823 (82%), Positives = 728/823 (88%), Gaps = 28/823 (3%) Query: 42 AAKPTGKATATA-VRATSSPAKAASTASAKKSSAKPASTAVRAAVPVVAKATTKAAATPT 100 A++ GKA +++ V+A SP KA P TA A AK ++K AA Sbjct: 2 ASQSAGKAVSSSNVKAVKSPTKA------------PTKTATLVAKSAAAKPSSKVAA--- 46 Query: 101 KKNLSQASIKPASVQSKASVTTKKPEPKTAKPAAKAAVKSEVK-DVSVMIAPGVSQTTDA 159 KP SVQSKA VT KK E K+ +AK K E + V+VMI P VSQTTDA Sbjct: 47 ---------KPVSVQSKAPVTNKKSEVKSTSKSAKVEPKVESRPGVNVMITPTVSQTTDA 97 Query: 160 AALAAIDTSGYILPSVKVPGRRGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKA 219 A LAAIDTSGYILPS+KVPGRRGRKPKEFQPENDE+AALNAVERAELKAVDKAKAKDRKA Sbjct: 98 ATLAAIDTSGYILPSIKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKA 157 Query: 220 KEKALLKDAFSSDTEATEEELERRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAI 279 KEKALLKDAFS+DTEA+EEELE RRQKLKTLIK GKERG+LT++EINDHLPENI+DPEAI Sbjct: 158 KEKALLKDAFSNDTEASEEELEARRQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAI 217 Query: 280 EGIIGTFNDMGISVYEHAPDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDP 339 EGIIGTFNDMGI+VYE APDAETLLLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDP Sbjct: 218 EGIIGTFNDMGIAVYEQAPDAETLLLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDP 277 Query: 340 VRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILVAADKISKDEIK 399 VRMYMREMGSVELLTREGEI+IAKRIEDGL+DMIQAISACPTTIAEI+ AA++ISKDE K Sbjct: 278 VRMYMREMGSVELLTREGEIDIAKRIEDGLRDMIQAISACPTTIAEIMAAAERISKDEAK 337 Query: 400 VDEIVDGLVDMSEGEVVVAAASDE--EDEEDDEEDGEEEEEEGESSNTGGAAGFSAEQLE 457 +DEIVDGLVDM+ E V+A + DEE++EE+ EE EEE E+ GAAGFS+EQLE Sbjct: 338 IDEIVDGLVDMNASEPVIAPPAPAAASDEEEEEEEEEEAEEEEETPAASGAAGFSSEQLE 397 Query: 458 QLKRDALGKFATISTQFDNMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCD 517 QLKRD+L KF+TI+ QFD MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCD Sbjct: 398 QLKRDSLAKFSTIAMQFDKMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCD 457 Query: 518 TLRAQVDEVRQIERQILDVAVNKCNMPRAHFIKVFPGNESNLDWVDGEVNGNHAYSVVLA 577 TLR QVDEVRQIE+QILD+AVN+C MPR HFIKVFPGNE+NLDWVDGEV GNH YS+VLA Sbjct: 458 TLRGQVDEVRQIEKQILDIAVNRCEMPRNHFIKVFPGNETNLDWVDGEVEGNHPYSIVLA 517 Query: 578 RNVPAIKELQQKLIDLQARVVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIA 637 RNVPA+KELQQKLIDLQARVVLPLPDLR IN+KM AGE KAR AKREMTEANLRLVISIA Sbjct: 518 RNVPAVKELQQKLIDLQARVVLPLPDLRAINRKMAAGEMKARKAKREMTEANLRLVISIA 577 Query: 638 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 697 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIR Sbjct: 578 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIR 637 Query: 698 IPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPI 757 IPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPI Sbjct: 638 IPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPI 697 Query: 758 GDDDDSHLGDFIEDNNTLAPADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDH 817 GDDDDSHLGDFIEDNNTLAPADAALHASMRGVVKD+LDSLTPREAKVLRMRFGIEMSTDH Sbjct: 698 GDDDDSHLGDFIEDNNTLAPADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDH 757 Query: 818 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 860 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 758 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 800 >ref|YP_003774296.1| RNA polymerase sigma-70 factor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62388.1| RNA polymerase sigma-70 factor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 850 Score = 1291 bits (3342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/864 (83%), Positives = 761/864 (88%), Gaps = 18/864 (2%) Query: 1 MADAMKKTAKTPTPSAKNTKPAVKPASKSTPVSRSVPKKTAAAKPTGKATA-TAVRATSS 59 MA+AMKK AKTP S K++K + + K TAAA+PT A + V+ T+ Sbjct: 1 MANAMKKPAKTPAASTKSSK------------TVTAAKPTAAARPTKAVAAKSPVKGTAK 48 Query: 60 PAKAASTASAKKSSAKPASTAVRAAVPVVAKATTKAAATPTKKNLSQASIKPASVQ-SKA 118 A T + ++A P TAV+ A+A A L QA+ + SV+ +K Sbjct: 49 AADTVKTTAKTAAAATPKKTAVKTTAAKPARAAAPKATATPANKLPQAAEQAVSVKATKT 108 Query: 119 SVTTKKPEPKTAKPAAKAAVKSEVKDVSVMIAPGVSQTTDAAALAAIDTSGYILPSVKVP 178 SVTTKKPE KTAK A V E KDVS A VSQTTDAAALAAIDTSGY+LPSVKVP Sbjct: 109 SVTTKKPETKTAKTTKAAKV--EGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVP 166 Query: 179 GRRGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEE 238 GRRGRKPKEFQPE+DE+AALN +ER ELKA DKAKAKDRKAKEKALLKDAFSSDTEA+EE Sbjct: 167 GRRGRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEE 226 Query: 239 ELERRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAIEGIIGTFNDMGISVYEHAP 298 ELERRRQKLKTLIK GKERG+LTFSEINDHLPENIVDPEAIEGIIGTF+DMGISVYEHAP Sbjct: 227 ELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAP 286 Query: 299 DAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE 358 DAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE Sbjct: 287 DAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGE 346 Query: 359 IEIAKRIEDGLKDMIQAISACPTTIAEILVAADKISKDEIKVDEIVDGLVDMSEGEVVV- 417 IEIAKRIEDGLKDMIQAISACPTTIAEIL AA++ISKDEIKVDEIVDGLVD +E E V Sbjct: 347 IEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVE 406 Query: 418 AAASDEEDEEDDEEDGEEEEEEGESSNTG-GAAGFSAEQLEQLKRDALGKFATISTQFDN 476 AA+SD +++++DEE+ EE+EEE ES +TG GAAGFSAEQLEQLKRDALGKFA I TQF+N Sbjct: 407 AASSDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFEN 466 Query: 477 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRAQVDEVRQIERQILDV 536 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAK+VEKLCDTLRAQVDEVR +ERQILDV Sbjct: 467 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDV 526 Query: 537 AVNKCNMPRAHFIKVFPGNESNLDWVDGEVNGNHAYSVVLARNVPAIKELQQKLIDLQAR 596 AVNKCNMPRAHFIKVFPGNE NLDWVDGEV NH YS VL+RNVPAIKELQQKLIDLQAR Sbjct: 527 AVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQAR 586 Query: 597 VVLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 656 VVLPL DLR INKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 587 VVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 646 Query: 657 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 716 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI Sbjct: 647 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 706 Query: 717 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 776 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA Sbjct: 707 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 766 Query: 777 PADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 836 PADAALHASMR VVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI Sbjct: 767 PADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 826 Query: 837 EAKALRKLRHPSRSDKLKSFLEGN 860 EAKALRKLRHPSRSDKLKSFLEGN Sbjct: 827 EAKALRKLRHPSRSDKLKSFLEGN 850 >ref|YP_001352183.1| RNA polymerase primary sigma factor [Janthinobacterium sp. Marseille] gb|ABR89248.1| RNA polymerase primary sigma factor [Janthinobacterium sp. Marseille] Length = 826 Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 698/862 (80%), Positives = 736/862 (85%), Gaps = 42/862 (4%) Query: 5 MKKTAKTPTPSAKNTKPAVKPASKSTPVSRSVPKKTAAAKPTGKATATA--VRATSSPAK 62 MKK AKT T +A K A S T V KK AAK G+A A A + TSSP+K Sbjct: 1 MKKPAKTQTLTASKAKSAAAVKSSKT-----VEKKVVAAKSAGQAKAVAAKTKVTSSPSK 55 Query: 63 AASTASAKKSSAKPASTAVRAAVPVVAKATTKAAATPTKKNLSQASIKPASVQSKASVTT 122 AA+ A K S K A+ KP SVQSKA VT Sbjct: 56 AAAKTPAAKLSPKVAA-------------------------------KPVSVQSKAPVTN 84 Query: 123 KKPEPKTAKPAAKAAVKSEVK-DVSVMIAPGVSQTTDAAALAAIDTSGYILPSVKVPGRR 181 KK E K A +AK K E + V+VMI VSQTTDAA LAAIDTSGYILPS+KVPGRR Sbjct: 85 KKSEVKPASKSAKVEPKVESRPGVNVMITATVSQTTDAATLAAIDTSGYILPSIKVPGRR 144 Query: 182 GRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEEELE 241 GRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEA+EEELE Sbjct: 145 GRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEELE 204 Query: 242 RRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAIEGIIGTFNDMGISVYEHAPDAE 301 RRQKLKTLIK GKERG+LT++EINDHLPENI+DPEAIEGIIGTFNDMGI+VYE APDAE Sbjct: 205 ARRQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQAPDAE 264 Query: 302 TLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEI 361 TLLLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEI+I Sbjct: 265 TLLLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIDI 324 Query: 362 AKRIEDGLKDMIQAISACPTTIAEILVAADKISKDEIKVDEIVDGLVDMSEGEVVVAAAS 421 AKRIEDGL+DMIQAISACPTTIAEI+ AA++ISKDE K+DEIVDGLVDM E VVA + Sbjct: 325 AKRIEDGLRDMIQAISACPTTIAEIIAAAERISKDEAKIDEIVDGLVDMDAAEPVVAPPA 384 Query: 422 DEEDEEDDEEDGEEEEEEGESSNT---GGAAGFSAEQLEQLKRDALGKFATISTQFDNMR 478 +D+E++ EEEEEE E T GAAGFS+EQLEQLKRD+L KF+TI+ QFD MR Sbjct: 385 PAASSDDEEDEEEEEEEEEEEEETTAASGAAGFSSEQLEQLKRDSLAKFSTIAQQFDKMR 444 Query: 479 KAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRAQVDEVRQIERQILDVAV 538 KAFEKEGYNSKPYVKAQEIISNELL IRFTAKVVEKLCDTLR QVDEVR IE+QILDVAV Sbjct: 445 KAFEKEGYNSKPYVKAQEIISNELLSIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAV 504 Query: 539 NKCNMPRAHFIKVFPGNESNLDWVDGEVNGNHAYSVVLARNVPAIKELQQKLIDLQARVV 598 N+C MPR HFIKVFPGNE+NLDWVDGEVNG HAYSVVLARNVP +KELQQKLIDLQARVV Sbjct: 505 NRCGMPRGHFIKVFPGNETNLDWVDGEVNGKHAYSVVLARNVPTVKELQQKLIDLQARVV 564 Query: 599 LPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 658 LPLPDLR INKKM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL Sbjct: 565 LPLPDLRAINKKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 624 Query: 659 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 718 MKAVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ Sbjct: 625 MKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 684 Query: 719 ETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPA 778 ETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPA Sbjct: 685 ETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPA 744 Query: 779 DAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA 838 DAALHASMRGVVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA Sbjct: 745 DAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA 804 Query: 839 KALRKLRHPSRSDKLKSFLEGN 860 KALRKLRHPSRSDKLKSFLEGN Sbjct: 805 KALRKLRHPSRSDKLKSFLEGN 826