BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0036.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751681.1| DNA primase [Collimonas fungivorans Ter331] ... 312 3e-83 ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1... 310 1e-82 ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille... 300 2e-79 ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans] >... 299 3e-79 ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9... 273 3e-71 >ref|YP_004751681.1| DNA primase [Collimonas fungivorans Ter331] gb|AEK60858.1| DNA primase [Collimonas fungivorans Ter331] Length = 598 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 156/243 (64%), Positives = 198/243 (81%), Gaps = 4/243 (1%) Query: 1 VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60 VRE GAEAFE+QI +AMPLSQFL+ EV + D++T EGRARAQ+DAKP++Q +PPSSLRL Sbjct: 351 VREMGAEAFERQIHDAMPLSQFLLNEVTAEADLSTSEGRARAQYDAKPLMQLMPPSSLRL 410 Query: 61 QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120 QIVR LAQ+TQ+TP EIE+LFEL++P+ AS RR PPRS R PVGLERQI+RLLVAHPA Sbjct: 411 QIVRGLAQLTQSTPNEIESLFELAKPI--ASARRAPPRSNRPPPVGLERQIIRLLVAHPA 468 Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180 AS+LD+ L V H APD A+M+ +L+ A +MGEQANFATL E LR+GG DFESLIAE Sbjct: 469 FASELDDAALDAVAHFAPDRAEMLARLITASHAMGEQANFATLAEHLREGGEDFESLIAE 528 Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240 IAAE+E+E+E R E+AGA+RQ KM+ +++E+ QL+ GL N+ A++RYRELMQ++E Sbjct: 529 IAAESESETE--AARLELAGAIRQTKMKTLKEELDQLAATGLGNDDARNRYRELMQKQEQ 586 Query: 241 LKR 243 L+R Sbjct: 587 LRR 589 >ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1] gb|ADJ62386.1| DNA primase protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 160/247 (64%), Positives = 196/247 (79%), Gaps = 4/247 (1%) Query: 1 VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60 VRE GA AFE+QI+EA+PLSQFL++E++G+ND+ TPEGRA AQF AKP+LQALP S+LRL Sbjct: 351 VREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRL 410 Query: 61 QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120 QIVRS+AQ TQ+TPAE+E LFEL +PV A R P RSKR APVGLERQI+RLLVAHP Sbjct: 411 QIVRSVAQATQSTPAELEVLFELEKPV--ARVRAAPARSKRTAPVGLERQIMRLLVAHPQ 468 Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180 LA+DLD L + APD A+M+T LV + MGEQANFA LVE LR+GG +F+S+IAE Sbjct: 469 LAADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVEHLREGGPEFDSMIAE 528 Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240 IAAE+ ESEFDVVR EM GA+RQ ++R +++EM+ L + LR E ++RYRELMQRKE Sbjct: 529 IAAES--ESEFDVVRAEMGGAIRQARIRALDEEMQMLVTSNLRTEEDRNRYRELMQRKEW 586 Query: 241 LKRLTGA 247 LKR GA Sbjct: 587 LKRQAGA 593 >ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille] gb|ABR88395.1| DNA primase [Janthinobacterium sp. Marseille] Length = 599 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/243 (62%), Positives = 192/243 (79%), Gaps = 4/243 (1%) Query: 1 VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60 +RE G EAFE+Q+++AMPLSQFL+KE VGDND+ TPEGRARAQFDAKP+LQALPPSSLRL Sbjct: 351 IRELGTEAFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQFDAKPLLQALPPSSLRL 410 Query: 61 QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120 QIVRSLAQ+T++TPAEIEALFEL++P+ + R PPR+KR AP GLERQI+RLLV+HP Sbjct: 411 QIVRSLAQITESTPAEIEALFELAQPI--SRVRAAPPRTKRAAPQGLERQIMRLLVSHPI 468 Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180 LA+++D L + H AP+ A+M+ QLV R MG QANFA L ELLR G+DFE LIAE Sbjct: 469 LAAEMDQAALDIAAHFAPERAEMLVQLVTLSREMGPQANFAILAELLRSSGSDFEPLIAE 528 Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240 IAAE ES+ + R E+AGA+RQ KM+ + DE+ QL AGL E AQ+R+REL +++ Sbjct: 529 IAAEP--ESDVALARLELAGAIRQTKMQALRDELDQLVAAGLVGEQAQARFRELTLQQDQ 586 Query: 241 LKR 243 L+R Sbjct: 587 LRR 589 >ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans] emb|CAL60658.1| DNA primase [Herminiimonas arsenicoxydans] Length = 602 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/243 (62%), Positives = 188/243 (77%), Gaps = 4/243 (1%) Query: 1 VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60 +R GAE+FE+Q+++AMPLSQFL+KE VGDND+ TPEGRAR QFDAKP+LQALPPSSLRL Sbjct: 354 IRAMGAESFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARTQFDAKPLLQALPPSSLRL 413 Query: 61 QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120 QIVR LAQ+T++TPAEIEALFEL +P+ + R PP+ KR APVGLERQI+RLLV HP Sbjct: 414 QIVRGLAQITESTPAEIEALFELVQPI--SRVRAAPPKGKRTAPVGLERQIMRLLVEHPV 471 Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180 LA++LD L V H AP+ A M+ QLV R MG ANFATL ELLR G+DF++L+AE Sbjct: 472 LAAELDQAALDVAAHFAPERADMLVQLVTMSREMGVHANFATLAELLRSSGSDFDTLVAE 531 Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240 IAAE+ ES+ D R E+AGA+RQ KM+ + EM+ L +GL E AQ+RYREL ++E Sbjct: 532 IAAES--ESDVDAARLELAGAIRQTKMKMLATEMETLIASGLSGEQAQARYRELTLQQEQ 589 Query: 241 LKR 243 L+R Sbjct: 590 LRR 592 >ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32146.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] Length = 598 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 143/243 (58%), Positives = 180/243 (74%), Gaps = 4/243 (1%) Query: 1 VREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPMLQALPPSSLRL 60 VRE G FEQQ+++AMPLSQFL+K V DND+TT EGRA+ QFDAKP+LQA+P SSLRL Sbjct: 351 VREHGTAGFEQQVRDAMPLSQFLLKVVTDDNDLTTSEGRAKVQFDAKPLLQAMPASSLRL 410 Query: 61 QIVRSLAQVTQTTPAEIEALFELSRPVVQASTRRPPPRSKRMAPVGLERQIVRLLVAHPA 120 QIVR LAQ+T+TTP EIE LFEL+ P A R PPR KR APVGLE Q++RLLVAHP Sbjct: 411 QIVRELAQLTRTTPTEIETLFELASPA--ARVRAAPPRGKRTAPVGLELQVMRLLVAHPV 468 Query: 121 LASDLDNDTLMVVGHHAPDHAQMVTQLVEACRSMGEQANFATLVELLRDGGADFESLIAE 180 LAS+LD D L + H PD A M+ QLV A + MG QA+FA L E LR GG +F+ +IAE Sbjct: 469 LASELDQDALDAMLHFVPDSAVMLMQLVVAGQEMGAQASFAMLSEHLRAGGPEFDGMIAE 528 Query: 181 IAAETEAESEFDVVRQEMAGAVRQMKMRQVEDEMKQLSIAGLRNEIAQSRYRELMQRKEH 240 +AAE ES+ D R E+AGAVRQ KM+ ++ E+ QL+ G+ ++ A++RYREL ++E Sbjct: 529 VAAEP--ESDRDAARLELAGAVRQTKMKVLKAELDQLAAGGMGHDEARTRYRELTLKQEQ 586 Query: 241 LKR 243 L+R Sbjct: 587 LRR 589