BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0029.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum s...   157   5e-37
ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacte...   151   3e-35
ref|YP_004751532.1| putative exonuclease V [Collimonas fungivora...   147   6e-34
ref|YP_001099029.1| putative exonuclease V [Herminiimonas arseni...   140   9e-32
ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacte...   101   3e-20

>ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 90/105 (85%)

Query: 7    LAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDEVWVLDY 66
            +A V+ AQA  +LAQP LERFFNPALHR AR+EMEIVT +G++R DRVV+FDDE+WV+DY
Sbjct: 1053 MAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNGLMRLDRVVMFDDELWVIDY 1112

Query: 67   KRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            KR LLDSER  Y AQL RYR+AL+SVFSDKQIRSALITA+G L E
Sbjct: 1113 KRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157


>ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
 gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1083

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 87/111 (78%)

Query: 1    LPCPRPLAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDE 60
            LPC R LA V+R QA  +LAQP L+RFF+PA HR AR+EMEIV++ GV R DRVV+FDDE
Sbjct: 972  LPCSRELAEVVRVQADTILAQPELQRFFDPAQHRFARNEMEIVSSAGVARFDRVVMFDDE 1031

Query: 61   VWVLDYKRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            +W+LDYKRNL DSERVAY AQLARYR A   VF   +IR+ALIT DG L E
Sbjct: 1032 LWILDYKRNLFDSERVAYAAQLARYRLAAQDVFPGLKIRTALITVDGTLTE 1082


>ref|YP_004751532.1| putative exonuclease V [Collimonas fungivorans Ter331]
 gb|AEK60709.1| putative exonuclease V [Collimonas fungivorans Ter331]
          Length = 1118

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 84/111 (75%)

Query: 1    LPCPRPLAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDE 60
            LPCP  LA  +R QA  +L Q  LE FFNPA+H HAR+EMEI+  + VLR DRVV+F++E
Sbjct: 1006 LPCPPALAKQVRRQAQTILGQAELEHFFNPAMHLHARNEMEIIADNAVLRFDRVVIFEEE 1065

Query: 61   VWVLDYKRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            VW+LDYKRNLLDSER AY AQL  YR A   VF DK++R+AL+T DGRL E
Sbjct: 1066 VWILDYKRNLLDSERAAYAAQLRSYRQAAQGVFGDKRLRTALLTVDGRLSE 1116


>ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
 emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB
            [Herminiimonas arsenicoxydans]
          Length = 1096

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 81/111 (72%)

Query: 1    LPCPRPLAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDE 60
            L C   +A  I  QA  +LAQP L RFF+PA HR AR+EME+V++ GV R DR V+FDDE
Sbjct: 984  LACTHEMAETISGQASVILAQPELARFFDPAQHRFARNEMEVVSSAGVARFDRAVMFDDE 1043

Query: 61   VWVLDYKRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            +W+LDYKRNLL+SER AY AQL RYR A   VF D +IRS LIT DGRL E
Sbjct: 1044 LWILDYKRNLLESERAAYAAQLERYRVAAQQVFPDVRIRSGLITVDGRLTE 1094


>ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
 gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1090

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 72/111 (64%)

Query: 1    LPCPRPLAAVIRAQAVNMLAQPALERFFNPALHRHARDEMEIVTADGVLRCDRVVVFDDE 60
            L C    A V+RAQA+ +LA P L +FF+P     A +E+E++    +LR DR+V   D 
Sbjct: 977  LDCSPACAGVVRAQALTILAAPDLSQFFDPHQIVFAHNEIELLHDGELLRFDRLVQLPDA 1036

Query: 61   VWVLDYKRNLLDSERVAYQAQLARYRTALLSVFSDKQIRSALITADGRLWE 111
            +W+LDYKR LL SER  Y AQLARYR A L+V++ + IR+ALI  DG   E
Sbjct: 1037 LWILDYKRRLLASERADYAAQLARYRRAALAVYAGQTIRTALILVDGSFHE 1087