BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0028.p (382 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum s... 483 e-134 ref|YP_004751532.1| putative exonuclease V [Collimonas fungivora... 459 e-127 ref|YP_001099029.1| putative exonuclease V [Herminiimonas arseni... 447 e-123 ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacte... 441 e-121 ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacte... 437 e-120 >ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 237/322 (73%), Positives = 271/322 (84%), Gaps = 4/322 (1%) Query: 1 MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60 MLLV+KR HL AYESALR AGIPF+SDKRGGLL+SLEIADLIALLTFLITPNDTRALAHV Sbjct: 626 MLLVRKRTHLAAYESALRAAGIPFISDKRGGLLESLEIADLIALLTFLITPNDTRALAHV 685 Query: 61 LKSPIIGAADEDLIALAQRSES----DWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAP 116 LKSPII A D+DL+ +A+R+ WW+++ A QQ G+ASAA+ RA LL +WL AAP Sbjct: 686 LKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAMQQEGAASAALVRAVTLLQRWLLAAP 745 Query: 117 HYPVHDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFID 176 H PVHDLLD ILH+G+L ARYAQ +P R+Q LGNI AFVEL+LN+DAGRYPSLPKFID Sbjct: 746 HLPVHDLLDMILHQGELVARYAQHASPLTRSQTLGNIAAFVELSLNMDAGRYPSLPKFID 805 Query: 177 ALRVLQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGIL 236 ALRVLQR A DAPDEAS+DA+ DAVRILTVHSAKGLEAPVV ++D NHSD DN+GIL Sbjct: 806 ALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGIL 865 Query: 237 CDWPQDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSG 296 C WPQDEDAPTHFSAFGR+SERG+ARD F+ EE + QEDWNLLYVA+TRAKQLL+VSG Sbjct: 866 CAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSG 925 Query: 297 VAGAKGALEGGIQEGSWYSRLF 318 VAG +GA GG+ +GSWY RLF Sbjct: 926 VAGTRGADAGGVVQGSWYQRLF 947 >ref|YP_004751532.1| putative exonuclease V [Collimonas fungivorans Ter331] gb|AEK60709.1| putative exonuclease V [Collimonas fungivorans Ter331] Length = 1118 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 237/317 (74%), Positives = 259/317 (81%), Gaps = 4/317 (1%) Query: 1 MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60 MLLVKKR HL AYESALR AGIPF+SDKRGGLL+SLEI+DLIALLTFLITP+D RAL HV Sbjct: 611 MLLVKKRSHLGAYESALRAAGIPFMSDKRGGLLESLEISDLIALLTFLITPDDARALGHV 670 Query: 61 LKSPIIGAADEDLIALAQRSESDWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAPHYPV 120 LKSPI GA+D+DLIALAQR E WW R+ AA + A+ A+ RA LL QWL AAP PV Sbjct: 671 LKSPIFGASDDDLIALAQRGERGWWARLRAASANADAAPALQRATALLEQWLQAAPRLPV 730 Query: 121 HDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFIDALRV 180 HDLLD ILH+GQL ARYAQA +P R+QA+GNIE FVELALN+DAGRYPSLPKFIDALR Sbjct: 731 HDLLDVILHQGQLLARYAQAASPLSRSQAIGNIETFVELALNMDAGRYPSLPKFIDALRG 790 Query: 181 LQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGILCDWP 240 LQ A DAPDEASIDAA DAVRILTVHSAKGLEAPVVV++D NHS PA D+ GILCDWP Sbjct: 791 LQNAAGGDAPDEASIDAATDAVRILTVHSAKGLEAPVVVLLDANHSKPARDDYGILCDWP 850 Query: 241 QDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSGVAGA 300 QD +AP HFSAFG +ERG ARD F AEE FK QEDWNLLYVA TRAKQLLIVSGVAG Sbjct: 851 QDAEAPLHFSAFGSSAERGAARDPLFAAEEGFKTQEDWNLLYVATTRAKQLLIVSGVAGR 910 Query: 301 KGALEGGIQEGSWYSRL 317 GG+ E SWY+RL Sbjct: 911 S----GGVTEDSWYARL 923 >ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB [Herminiimonas arsenicoxydans] Length = 1096 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/317 (70%), Positives = 252/317 (79%), Gaps = 1/317 (0%) Query: 1 MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60 MLLVKKR HL AYE ALREAGIPF SDKRGGLL+SLE+ADLIALL FLITP+D ALAHV Sbjct: 587 MLLVKKRTHLRAYERALREAGIPFASDKRGGLLESLEVADLIALLNFLITPHDNLALAHV 646 Query: 61 LKSPIIGAADEDLIALAQRSESDWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAPHYPV 120 LKSPI+ A D++LIALA+R E WW R L A+ + +S A+ RAA LL +WL AP PV Sbjct: 647 LKSPIMAAGDDELIALAERREKTWWLR-LQAEVTELSSPALLRAAGLLEKWLHLAPRLPV 705 Query: 121 HDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFIDALRV 180 HDLLDRILHEG + ARYAQ +P +R Q LGNIEAF ELALNLDAGRYPSLPKFIDALR Sbjct: 706 HDLLDRILHEGDVVARYAQTASPLVRGQVLGNIEAFTELALNLDAGRYPSLPKFIDALRR 765 Query: 181 LQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGILCDWP 240 LQ+ A+SDAPDEA IDAA DAVRILT+H AKGLEAP+VV++D NHSD A D++G+LC WP Sbjct: 766 LQKSADSDAPDEADIDAALDAVRILTIHGAKGLEAPIVVLLDANHSDGARDDVGVLCAWP 825 Query: 241 QDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSGVAGA 300 QD DAPTHFS FGR++ERG ARD F EE K QEDWNLLYVA TRAK LLIVSGVA Sbjct: 826 QDRDAPTHFSVFGRQAERGAARDTLFAEEEQLKQQEDWNLLYVATTRAKNLLIVSGVADN 885 Query: 301 KGALEGGIQEGSWYSRL 317 + G+ +G WY+R Sbjct: 886 RSTTVNGVADGRWYARF 902 >ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1083 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/317 (68%), Positives = 250/317 (78%), Gaps = 3/317 (0%) Query: 1 MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60 MLLVKKR HL AYE ALREAGIPF SD+RGGLL+SLE+ADLIALLTFLITP+D ALAHV Sbjct: 579 MLLVKKRTHLSAYERALREAGIPFASDRRGGLLESLEVADLIALLTFLITPHDNLALAHV 638 Query: 61 LKSPIIGAADEDLIALAQRSESDWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAPHYPV 120 LKSPI+GA D DLIALA R+E WW R+ Q+ S + RA LL +WL+ A PV Sbjct: 639 LKSPIMGATDNDLIALALRAEKTWWGRL---HQAELNSEVLQRAVSLLEKWLELAARLPV 695 Query: 121 HDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFIDALRV 180 HDLLDRILHEG + ARYAQA +P +R Q L NIEAF ELALNLDAGRYPSLPKFIDALR Sbjct: 696 HDLLDRILHEGDVVARYAQAASPLVRGQVLANIEAFTELALNLDAGRYPSLPKFIDALRR 755 Query: 181 LQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGILCDWP 240 LQ+ A+SDAPDEA IDA+ DA RILT+H AKGLEA +VV++D NHSDPA D+ G+LC+W Sbjct: 756 LQKSADSDAPDEAEIDASLDAARILTIHGAKGLEADIVVLLDANHSDPARDDYGVLCEWK 815 Query: 241 QDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSGVAGA 300 Q+ DAP HFS FGR++ERG ARD F EE K QEDWNLLYVA TRAK+LLIVSGVA A Sbjct: 816 QEADAPNHFSVFGRQAERGAARDYLFAEEEQLKTQEDWNLLYVATTRAKKLLIVSGVADA 875 Query: 301 KGALEGGIQEGSWYSRL 317 + A E G+ +G WY+R Sbjct: 876 RSASENGVADGCWYARF 892 >ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] Length = 1090 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 250/319 (78%), Gaps = 6/319 (1%) Query: 1 MLLVKKRRHLIAYESALREAGIPFVSDKRGGLLDSLEIADLIALLTFLITPNDTRALAHV 60 MLLVKKR HL AYE+ALREAGIPF SDKRGGLL+SLEIADLIALLTFLITP D RALAHV Sbjct: 586 MLLVKKRAHLGAYETALREAGIPFASDKRGGLLESLEIADLIALLTFLITPGDNRALAHV 645 Query: 61 LKSPIIGAADEDLIALAQRSESDWWKRVLAAQQSGSASAAIARAAHLLAQWLDAAPHYPV 120 LKSPIIGAAD DLI LAQ WW+R+LA + + A L WL AP PV Sbjct: 646 LKSPIIGAADTDLIRLAQHDGGSWWQRLLALED------VLPDATMQLQHWLMIAPGLPV 699 Query: 121 HDLLDRILHEGQLAARYAQAVAPSMRNQALGNIEAFVELALNLDAGRYPSLPKFIDALRV 180 HDLLDRILHEGQL ARYA +V +R Q +GN+EAF LALNLDAGRYPSLPKFIDALR Sbjct: 700 HDLLDRILHEGQLVARYAASVPALLRGQVIGNLEAFTALALNLDAGRYPSLPKFIDALRA 759 Query: 181 LQRHAESDAPDEASIDAAADAVRILTVHSAKGLEAPVVVVMDTNHSDPANDNIGILCDWP 240 LQ A +DAPDEA IDAA DAVRILT+HSAKGLEA +VV++D NHS+PA D+ GILC+WP Sbjct: 760 LQNAAHNDAPDEADIDAALDAVRILTIHSAKGLEADIVVLLDANHSEPARDDAGILCEWP 819 Query: 241 QDEDAPTHFSAFGRKSERGTARDRWFDAEEHFKMQEDWNLLYVALTRAKQLLIVSGVAGA 300 QD APTHFSAFGR +ERG ARD F E+ F++QEDWNLLYVA+TRA+Q LIVSGVAG Sbjct: 820 QDAAAPTHFSAFGRVAERGAARDALFADEDRFRVQEDWNLLYVAMTRARQCLIVSGVAGK 879 Query: 301 KGALEGGIQEGSWYSRLFD 319 + A G +GSWY+RL + Sbjct: 880 RNAQADGTVDGSWYARLLE 898