BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0027.p (514 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum s... 613 e-173 ref|YP_004751532.1| putative exonuclease V [Collimonas fungivora... 594 e-167 ref|YP_001099029.1| putative exonuclease V [Herminiimonas arseni... 572 e-161 ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacte... 570 e-160 ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacte... 566 e-159 >ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 335/492 (68%), Positives = 375/492 (76%), Gaps = 17/492 (3%) Query: 14 AAYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAI 73 AAYE+NG +AA FT AACDPR SVVVEACAGSGKTWLLVARMLRLLLAGAQ ELLAI Sbjct: 9 AAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAI 68 Query: 74 TFTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAG 133 TFTRKAAQEMRERL+ELL EL LA A LL ERGV DLPRL+PLAR LYE+IL+ Sbjct: 69 TFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSS 128 Query: 134 QQGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIK 193 +Q LSIDTFHSWFARLLQIAPLASGVP+GY LTEKNGE+++EAYRRFMQ +++P IK Sbjct: 129 EQSLSIDTFHSWFARLLQIAPLASGVPYGYTLTEKNGELLDEAYRRFMQTLREPEGAHIK 188 Query: 194 LALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPP---------LSSEEAPLQWLEELC 244 ALLELY+LAGD AR LLD+F+DKRAEWWAAT + APL+WL+ LC Sbjct: 189 AALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDEQEGEEGAEEHAAPAPLRWLQALC 248 Query: 245 GPDAARARARXAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEAS 304 G D A RDARL++W + L AR +++ LLG+G + NQ RAVAIE+ +S + Sbjct: 249 GAD--------AQRDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPA 300 Query: 305 AEQFVALATQFYDDNGKPRGNTKTKDLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQL 364 E F AL +QF+DD KPR N K K L AAL +H+ ED A+ F+ F G LR+L Sbjct: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALVAFEMEFNAVGEALRKL 360 Query: 365 QRRSAEGIVLKLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQ 424 Q RS E VL+LN ALFTAGRAYL YQEVKAEQRV DFADLEW AYRLL NE SAAYLQ Sbjct: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 Query: 425 SRLDARYKHILLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 484 +RLDARYKHILLDEFQDTNPLQW IVR WL AYGGDAAQPSVFVVGDPKQSIYRFRRAEP Sbjct: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 Query: 485 RVFAAARARARA 496 RVF AAR RA Sbjct: 481 RVFVAAREMLRA 492 >ref|YP_004751532.1| putative exonuclease V [Collimonas fungivorans Ter331] gb|AEK60709.1| putative exonuclease V [Collimonas fungivorans Ter331] Length = 1118 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 312/478 (65%), Positives = 361/478 (75%), Gaps = 14/478 (2%) Query: 14 AAYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAI 73 +AY +NG A FT AACDP+ SVVVEACAGSGKTWLLVARMLRLLLAGA P+ELLAI Sbjct: 27 SAYRMNGVVVAAQDFTNAACDPQHSVVVEACAGSGKTWLLVARMLRLLLAGAAPSELLAI 86 Query: 74 TFTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAG 133 TFTRKAAQEMRERL+ELL +L L P + RQLLLERG+ DL +++P AR LYE++LA Sbjct: 87 TFTRKAAQEMRERLLELLHDLALQPDAKVRQLLLERGIAQHDLAQVLPAARDLYERVLAS 146 Query: 134 QQGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIK 193 Q LSIDTFHSWFARLLQIAPLASGVPHGYALTEK GE++ +AY RFMQ++ ++ Sbjct: 147 PQSLSIDTFHSWFARLLQIAPLASGVPHGYALTEKTGELLADAYLRFMQSLNDEENSQVR 206 Query: 194 LALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPPLSSEEAPLQWLEELCGPDAARARA 253 LL LY L GD R LL++F+DKRAEWWA + +APLQWL ELCG D Sbjct: 207 QDLLALYQLVGDFSTRKLLNAFIDKRAEWWAVIQQGV---DAPLQWLRELCGED------ 257 Query: 254 RXAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEASAEQFVALAT 313 A DARL++W DE L +++ +I+ LLG+G+ATNQKRA AIE ++ A+ F AL Sbjct: 258 --AEIDARLSLWDDEKLLSQVKQIAWLLGQGSATNQKRATAIEMALTAGAAVVNFDALCH 315 Query: 314 QFYDDNGKPRGNTKTKDLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQLQRRSAEGIV 373 QF+DD GKPR N K KDL AL G + A+ FD F+ TG+ L+ L++RS E V Sbjct: 316 QFFDDAGKPRSNGKAKDLLKALENSLGGN---ALDAFDAQFDATGDTLKLLRKRSHERTV 372 Query: 374 LKLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQSRLDARYKH 433 L LN+ LF+ G AYL+ YQ +KAEQRVFDFADLEW AYRLLTN ESAAYLQSRLD RYKH Sbjct: 373 LSLNQHLFSVGNAYLECYQALKAEQRVFDFADLEWQAYRLLTNPESAAYLQSRLDTRYKH 432 Query: 434 ILLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFAAAR 491 ILLDEFQDTNPLQWSIVRAWL AYG DA QPSVFVVGDPKQSIYRFRRAEPRVF AAR Sbjct: 433 ILLDEFQDTNPLQWSIVRAWLSAYGEDAGQPSVFVVGDPKQSIYRFRRAEPRVFEAAR 490 >ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB [Herminiimonas arsenicoxydans] Length = 1096 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 310/477 (64%), Positives = 354/477 (74%), Gaps = 16/477 (3%) Query: 15 AYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAIT 74 AYEING A+A F A ACDP +SVVVEACAGSGKTWLLVAR+LRLLLAG +PA +LAIT Sbjct: 13 AYEINGVQADAERFVAIACDPARSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAIT 72 Query: 75 FTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAGQ 134 FTRKAAQEMRERLM+LL ELTL P LL ERGV +L L+PLAR LYE++L Sbjct: 73 FTRKAAQEMRERLMQLLHELTLKPEADVLTLLRERGVADHELLALLPLARGLYERVLRSP 132 Query: 135 QGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIKL 194 Q LSIDTFHSWFARL+QIAPLASGVPHGYALTE GE+ ++AY RFMQ V + Q +K Sbjct: 133 QALSIDTFHSWFARLVQIAPLASGVPHGYALTESTGELSSDAYSRFMQTVNEADNQEVKD 192 Query: 195 ALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPPLSSEEAPLQWLEELCGPDAARARAR 254 AL+ LY GDS ARNLLD+F KRAEWWA+ PL+WL ELCG D Sbjct: 193 ALIALYAQVGDSNARNLLDAFAGKRAEWWASV-----QNGEPLEWLTELCGED------- 240 Query: 255 XAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEASAEQFVALATQ 314 A DARL +WSDE AR+ +I+ LLG+G+A NQ+RA AIE +S A+ E F AL + Sbjct: 241 -AEVDARLALWSDEKTVARIGQIAWLLGQGSAVNQERATAIEKALSSGAALENFAALTNE 299 Query: 315 FYDDNGKPRGNTKTKDLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQLQRRSAEGIVL 374 F+D NGK R N TKDL AL + G D V F+ FE G L+ + RRS E V+ Sbjct: 300 FFDANGKFRKNRTTKDLTKALLGNLG---DEGVYAFEVEFEAVGEALKTILRRSMEPAVI 356 Query: 375 KLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQSRLDARYKHI 434 LNRALFT G AYL+ YQ VKAEQRVFDFADLEW AYRLLTNEE AAYLQSRLDARY+H+ Sbjct: 357 ALNRALFTVGAAYLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHV 416 Query: 435 LLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFAAAR 491 LLDEFQDTNPLQWSIV+AWL AYG DA +PS+FVVGDPKQSIYRFRRAEPRVF+AA+ Sbjct: 417 LLDEFQDTNPLQWSIVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAK 473 >ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] Length = 1090 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 302/479 (63%), Positives = 347/479 (72%), Gaps = 17/479 (3%) Query: 15 AYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAIT 74 AY IN A AF AAACDPR SVVVEACAGSGKTWLLVARMLRLLLAG P+E+LAIT Sbjct: 6 AYTINDAEASTEAFIAAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLAIT 65 Query: 75 FTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAGQ 134 FTRKAAQEMR+RL++LLREL LAP D R LLLERG+ A +L LMPLAR LYE++LA Sbjct: 66 FTRKAAQEMRDRLIQLLRELALAPDDTVRTLLLERGIAASELNALMPLARGLYEKVLASP 125 Query: 135 QGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIKL 194 Q LSIDTFHSWFA+L+++APLASGVPHGY+LT G + +AY RFMQ + + Q ++ Sbjct: 126 QALSIDTFHSWFAKLIRLAPLASGVPHGYSLTAATGALALDAYSRFMQVLNEDGQSEVRQ 185 Query: 195 ALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPPLSSEEAPLQWLEELCGPDAARARAR 254 AL LY+L GD AR LLD+F+ KRAEWWAA+ L PL L ELCG D Sbjct: 186 ALQHLYELVGDWNARKLLDAFVGKRAEWWAASQTGL-----PLDTLAELCGDD------- 233 Query: 255 XAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEASAEQFVALATQ 314 DARL++W+D L +++ ++ LLG+G NQ+RAVAIET ++ AS + F L Q Sbjct: 234 -GVTDARLSLWNDTALVSKMQTMAWLLGQGAKRNQERAVAIETALTAGASLDGFQQLFLQ 292 Query: 315 FYDDNGKPRGNTKTK-DLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQLQRRSAEGIV 373 F DD GK RGN + L AA + G D + F+ F L QLQRRS E V Sbjct: 293 FMDDKGKVRGNDHRRGKLLAANEINLG---DNSADSFETEFGTLAAALMQLQRRSTETTV 349 Query: 374 LKLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQSRLDARYKH 433 L LN ALFT G AYL YQ VKAEQRVFDFADLEW AYRLL NEE AAYLQSRLD+RY+H Sbjct: 350 LALNAALFTVGAAYLAVYQAVKAEQRVFDFADLEWQAYRLLGNEEHAAYLQSRLDSRYRH 409 Query: 434 ILLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFAAARA 492 ILLDEFQDTNPLQWSIVRAWL AYG D+A PSVF+VGDPKQSIYRFRRAEPRVF AARA Sbjct: 410 ILLDEFQDTNPLQWSIVRAWLAAYGDDSAAPSVFIVGDPKQSIYRFRRAEPRVFLAARA 468 >ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1083 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 302/477 (63%), Positives = 357/477 (74%), Gaps = 16/477 (3%) Query: 15 AYEINGRPAEAAAFTAAACDPRQSVVVEACAGSGKTWLLVARMLRLLLAGAQPAELLAIT 74 AYEING ++AA F A ACDP +SVVVEACAGSGKTWLLVAR+LRLLLAG +PA +LAIT Sbjct: 5 AYEINGAQSDAAHFVARACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAIT 64 Query: 75 FTRKAAQEMRERLMELLRELTLAPADQARQLLLERGVDADDLPRLMPLARSLYEQILAGQ 134 FTRKAAQEMRERLM+LL ELTL P + LL ERG+ L +P AR LYEQ+L Sbjct: 65 FTRKAAQEMRERLMQLLHELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLRSP 124 Query: 135 QGLSIDTFHSWFARLLQIAPLASGVPHGYALTEKNGEIMNEAYRRFMQAVQKPAQQAIKL 194 Q LSIDTFHSWFARL+QIAPLASGVPHGY+LTE GE++++AY RFMQ V + QQ +K Sbjct: 125 QALSIDTFHSWFARLIQIAPLASGVPHGYSLTEATGELLSDAYSRFMQQVNEKDQQHVKD 184 Query: 195 ALLELYDLAGDSGARNLLDSFLDKRAEWWAATMPPLSSEEAPLQWLEELCGPDAARARAR 254 AL++LY GD RNLL+SF+ KRAEWWA+ PL+WLEELCG D Sbjct: 185 ALVDLYTQVGDFSTRNLLNSFVAKRAEWWASVQGG-----EPLEWLEELCGAD------- 232 Query: 255 XAARDARLTVWSDEGLKARLYEISSLLGKGTATNQKRAVAIETLVSGEASAEQFVALATQ 314 DARL++WSD+ L AR+ +++ LLG+GTA NQ+RA AIE V+ A+ E F AL + Sbjct: 233 -GVTDARLSLWSDDKLLARINQVAWLLGQGTAVNQERATAIEKAVTAGAALENFDALTNE 291 Query: 315 FYDDNGKPRGNTKTKDLKAALSKHYGVDEDVAVSLFDEVFELTGNELRQLQRRSAEGIVL 374 F+D GK R N TK+L AL + G + V F+ FE G L+++ RRS E V+ Sbjct: 292 FFDAGGKFRKNRATKNLTKALLDNLG---EEGVYAFEVEFESIGEALKKILRRSMEPKVI 348 Query: 375 KLNRALFTAGRAYLDAYQEVKAEQRVFDFADLEWHAYRLLTNEESAAYLQSRLDARYKHI 434 LNR+LFT G AYL+ YQ VKAEQRVFDFADLEW AYRLLTNEE AAYLQSRLDARYKH+ Sbjct: 349 ALNRSLFTVGAAYLEIYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHV 408 Query: 435 LLDEFQDTNPLQWSIVRAWLRAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFAAAR 491 LLDEFQDTNPLQWSIV+AWL+AYG + +PS+FVVGDPKQSIYRFRRAEPRVF+AAR Sbjct: 409 LLDEFQDTNPLQWSIVQAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAR 465