BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0024.p (422 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774285.1| transcription termination factor Rho protein... 841 0.0 ref|YP_004751529.1| transcription termination factor Rho [Collim... 833 0.0 ref|YP_001099026.1| transcription termination factor Rho [Hermin... 829 0.0 ref|YP_001352312.1| transcription termination factor Rho [Janthi... 828 0.0 ref|ZP_04578130.1| transcription termination factor Rho [Oxaloba... 795 0.0 >ref|YP_003774285.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] gb|ADJ62377.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/420 (97%), Positives = 418/420 (99%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKA+HVSALLEMAI LDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GE PEASKHRILFENLTPLHPNK++QLER+MRGEENITGRIIDLIAP+GRGQRGLLVASP Sbjct: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG+ Sbjct: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 >ref|YP_004751529.1| transcription termination factor Rho [Collimonas fungivorans Ter331] gb|AEK60706.1| Transcription termination factor Rho [Collimonas fungivorans Ter331] Length = 420 Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/419 (97%), Positives = 416/419 (99%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GE+PEASKHRILFENLTPLHPNK + LER+MRGEENITGRIID+IAPIG+GQRGLLVASP Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLPLERDMRGEENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMKSTKNNAEFFDMMRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYSMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 >ref|YP_001099026.1| transcription termination factor Rho [Herminiimonas arsenicoxydans] emb|CAL60899.1| transcription termination factor (ATP-dependent helicase rho) [Herminiimonas arsenicoxydans] Length = 421 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKALHVSALLEMAI LDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GEAPEASKHRILFENLTPLHPNK + LER+MRGEENITGR+IDLIAPIG+GQRGLLVASP Sbjct: 121 GEAPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRVIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSV+LQHIAHAITTNHPD VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRG+ Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp. Marseille] gb|ABR88881.1| Rho transcription termination factor [Janthinobacterium sp. Marseille] Length = 421 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKALHVSALLEMAI LDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GE+PEASKHRILFENLTPLHPNK + LER+MRGEENITGRIIDLIAPIG+GQRGLLVASP Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHP+ VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRG+ Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|ZP_04578130.1| transcription termination factor Rho [Oxalobacter formigenes OXCC13] gb|EEO29103.1| transcription termination factor Rho [Oxalobacter formigenes OXCC13] Length = 420 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/419 (90%), Positives = 409/419 (97%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELK+LHVSALLEMA+GL+IDNAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPD Sbjct: 1 MHLSELKSLHVSALLEMALGLEIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 G PE SKHR+LFENLTPLHP++ ++LERE+ +ENITGRIID+IAPIG+GQRGLLVASP Sbjct: 121 GAPPEQSKHRLLFENLTPLHPDEPLKLEREISSQENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+VMLQH+AHAITTNHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHV Sbjct: 181 KSGKTVMLQHMAHAITTNHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419