BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0022.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a...   190   6e-47
ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, ...   174   4e-42
ref|ZP_01914818.1| ABC branched-chain amino acid family transpor...   168   2e-40
ref|YP_003778163.1| amino acid ABC transporter periplasmic prote...   167   5e-40
ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidu...   165   2e-39

>ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding
           protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding
           protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 409

 Score =  190 bits (482), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 107/126 (84%), Gaps = 5/126 (3%)

Query: 1   MKVKMTAIAATVV-----AACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVE 55
           M  K+ +IA   +     A CA  FAG A+AQISG+ VKIG ITD+SG+Y DIDGQGGVE
Sbjct: 1   MNTKLKSIAPKTMTLAISAVCALAFAGSASAQISGDTVKIGFITDISGLYSDIDGQGGVE 60

Query: 56  AIKMAIADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAM 115
           AIKMAIADFGG++NGKKIELI+ADHQNKADIAASKAREWFDQQGVDMLIGGTNSGT+LAM
Sbjct: 61  AIKMAIADFGGTLNGKKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAM 120

Query: 116 AKVAGE 121
           +KVA E
Sbjct: 121 SKVALE 126


>ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding
           protein [Collimonas fungivorans Ter331]
 gb|AEK64230.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding
           protein [Collimonas fungivorans Ter331]
          Length = 408

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 100/121 (82%)

Query: 1   MKVKMTAIAATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMA 60
           M +K+  +A  V +  A G A  A+AQISG+ +KIG ITD+S VY DIDG GG EAIKMA
Sbjct: 5   MNIKLKTLAVAVGSTLALGLATQASAQISGDTIKIGFITDMSSVYSDIDGPGGAEAIKMA 64

Query: 61  IADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAG 120
           IAD GG++NGKKIEL+ ADHQNKADIA+SKAREWFDQQG+DMLIGGTNSGT+LAMAK+A 
Sbjct: 65  IADMGGAINGKKIELVVADHQNKADIASSKAREWFDQQGLDMLIGGTNSGTALAMAKIAV 124

Query: 121 E 121
           E
Sbjct: 125 E 125


>ref|ZP_01914818.1| ABC branched-chain amino acid family transporter, periplasmic
           ligand binding protein [Limnobacter sp. MED105]
 gb|EDM84134.1| ABC branched-chain amino acid family transporter, periplasmic
           ligand binding protein [Limnobacter sp. MED105]
          Length = 401

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 97/112 (86%)

Query: 10  ATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVN 69
           AT +AA  A  AG A AQIS + +KIG+ITD+SG+Y DIDG GGVEA+KMAIADFGG++N
Sbjct: 7   ATGLAALFAVVAGSAQAQISNDTIKIGVITDMSGLYADIDGPGGVEAVKMAIADFGGTLN 66

Query: 70  GKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           GKKIEL+ ADHQNKADIAASKAREWFD +GVDMLI GTNSGT+LAMAKVA E
Sbjct: 67  GKKIELVFADHQNKADIAASKAREWFDTEGVDMLISGTNSGTALAMAKVAEE 118


>ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
 emb|CAP19671.1| periplasmic component protein [Herbaspirillum seropedicae]
 gb|ADJ66255.1| ABC-type amino acid transport system, periplasmic component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 88/95 (92%)

Query: 27  QISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNKADI 86
           QISG+V+KIG ITD+SGVY DIDGQGG EAIKMAIAD GG++NGKKIEL+ ADHQNKAD+
Sbjct: 25  QISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADV 84

Query: 87  AASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           AASKAREWFDQQGVDMLIGGTNSGT+LA AKVA E
Sbjct: 85  AASKAREWFDQQGVDMLIGGTNSGTALASAKVAAE 119


>ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidus metallidurans
           CH34]
 gb|ABF10390.1| ABC-type transporter, periplasmic component [Cupriavidus
           metallidurans CH34]
          Length = 402

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/119 (68%), Positives = 95/119 (79%)

Query: 3   VKMTAIAATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIA 62
           +KMT +A  V A     FAG A+AQ+SG+ VKIG ITD+SG+Y DIDG GG+EA+KMAI 
Sbjct: 1   MKMTRLAVAVAATVLGAFAGGASAQVSGDTVKIGYITDMSGLYADIDGPGGLEAVKMAIE 60

Query: 63  DFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGE 121
           D GG V GK IEL++ADHQNKADIAASKAREW DQQG+DML+GGTNS T LAM KVA E
Sbjct: 61  DHGGKVLGKPIELVSADHQNKADIAASKAREWMDQQGLDMLLGGTNSATGLAMNKVAQE 119