BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0021.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 684 0.0 ref|YP_003778163.1| amino acid ABC transporter periplasmic prote... 630 e-178 ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, ... 624 e-176 ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ... 623 e-176 ref|ZP_01914818.1| ABC branched-chain amino acid family transpor... 623 e-176 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/409 (78%), Positives = 365/409 (89%), Gaps = 5/409 (1%) Query: 30 MKVKMTAIAA-----TVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVE 84 M K+ +IA + A CA FAG A+AQISG+ VKIG ITD+SG+Y DIDGQGGVE Sbjct: 1 MNTKLKSIAPKTMTLAISAVCALAFAGSASAQISGDTVKIGFITDISGLYSDIDGQGGVE 60 Query: 85 AIKMAIADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAM 144 AIKMAIADFGG++NGKKIELI+ADHQNKADIAASKAREWFDQQGVDMLIGGTNSGT+LAM Sbjct: 61 AIKMAIADFGGTLNGKKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAM 120 Query: 145 AKVAGEKKKTFIAVGGATARLTNEECTPYTIHYAYDTVALAKGTGSAIVKNGGKSWYFLT 204 +KVA EKKK FI++G TARLTNEECTPYT+HYAYDTVALAKGTG+A+VK GGKSW+FLT Sbjct: 121 SKVALEKKKPFISIGAGTARLTNEECTPYTLHYAYDTVALAKGTGAAVVKQGGKSWFFLT 180 Query: 205 ADYAFGASLEKDTSDIVKANGGTVTGAVKHPLGASDFSSFMLQAQASKAQILGLANAGGD 264 ADYAFGASLE DT+ +VKANGGTV+G+V+HPL ASDFSSF+LQAQASKAQILGLANAGGD Sbjct: 181 ADYAFGASLENDTTSVVKANGGTVSGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGD 240 Query: 265 TINSIKAANEFGINKTMKLAGLLMFINDVHALTLQVTQGMYLTDGWYWDMNQETRDWSKR 324 T+N+IKAANEFG+NKTMKLAGLLMFINDVH+LT ++TQGMYLTD WYWD N E+R WS+R Sbjct: 241 TVNAIKAANEFGVNKTMKLAGLLMFINDVHSLTPKLTQGMYLTDSWYWDQNDESRKWSRR 300 Query: 325 YFAKMKRMPSMLQAADYSATTQYLNAVKASGTDDPDKVIAQMHKTKINDFFAKNGYIRPD 384 YF KMK+MPS LQAADYSAT YLNAVKA+G+DD DKV+AQM KTKIND +AKNG IR D Sbjct: 301 YFEKMKKMPSSLQAADYSATLTYLNAVKATGSDDTDKVMAQMRKTKINDMYAKNGMIRDD 360 Query: 385 GRMVHDMYLMEVKKPSESKYPWDYYKVVQTIPAEQAWTTKAESKCSLWK 433 G M+HDMYLM+VK P+ESKYPWDYYKV+QTIP EQA+TTKAE+KC+ WK Sbjct: 361 GSMIHDMYLMQVKSPTESKYPWDYYKVIQTIPGEQAFTTKAETKCASWK 409 >ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19671.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ66255.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 293/378 (77%), Positives = 335/378 (88%) Query: 56 QISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVNGKKIELITADHQNKADI 115 QISG+V+KIG ITD+SGVY DIDGQGG EAIKMAIAD GG++NGKKIEL+ ADHQNKAD+ Sbjct: 25 QISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADV 84 Query: 116 AASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGEKKKTFIAVGGATARLTNEECTPYTI 175 AASKAREWFDQQGVDMLIGGTNSGT+LA AKVA EKKK ++ +G +ARLTNEEC+PYT+ Sbjct: 85 AASKAREWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTV 144 Query: 176 HYAYDTVALAKGTGSAIVKNGGKSWYFLTADYAFGASLEKDTSDIVKANGGTVTGAVKHP 235 HYAYDTVALAKGTGSA+VK GGKSW+FLTADYAFG SLE DT+++VKA+GGTV GAVKHP Sbjct: 145 HYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKHP 204 Query: 236 LGASDFSSFMLQAQASKAQILGLANAGGDTINSIKAANEFGINKTMKLAGLLMFINDVHA 295 LGASDFSSF+LQAQ+SKAQI+GLANAGGD INS+KAANEFGI KT KLAGLL+FINDVH+ Sbjct: 205 LGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTAKLAGLLVFINDVHS 264 Query: 296 LTLQVTQGMYLTDGWYWDMNQETRDWSKRYFAKMKRMPSMLQAADYSATTQYLNAVKASG 355 LTL+ T+G+YLTD WYWD N+ETR ++KRYFA K+MPS LQAADYSA QYL VK G Sbjct: 265 LTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPSSLQAADYSAALQYLKVVKEIG 324 Query: 356 TDDPDKVIAQMHKTKINDFFAKNGYIRPDGRMVHDMYLMEVKKPSESKYPWDYYKVVQTI 415 TDD DKV+A + K K ND + KNGY+R DGR++HDMYL +VK SESKYPWDYYK+VQTI Sbjct: 325 TDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLYQVKAQSESKYPWDYYKLVQTI 384 Query: 416 PAEQAWTTKAESKCSLWK 433 PAEQAWTTKAESKC+ WK Sbjct: 385 PAEQAWTTKAESKCAAWK 402 >ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK64230.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 408 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 292/407 (71%), Positives = 339/407 (83%) Query: 27 EQKMKVKMTAIAATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAI 86 E+ M +K+ +A V + A G A A+AQISG+ +KIG ITD+S VY DIDG GG EAI Sbjct: 2 EKTMNIKLKTLAVAVGSTLALGLATQASAQISGDTIKIGFITDMSSVYSDIDGPGGAEAI 61 Query: 87 KMAIADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAK 146 KMAIAD GG++NGKKIEL+ ADHQNKADIA+SKAREWFDQQG+DMLIGGTNSGT+LAMAK Sbjct: 62 KMAIADMGGAINGKKIELVVADHQNKADIASSKAREWFDQQGLDMLIGGTNSGTALAMAK 121 Query: 147 VAGEKKKTFIAVGGATARLTNEECTPYTIHYAYDTVALAKGTGSAIVKNGGKSWYFLTAD 206 +A EKKK F +G + RLTNEECTPYT+HYAYDT ALA GTGSA+VK GGKSWYFLTAD Sbjct: 122 IAVEKKKPFFEIGAGSTRLTNEECTPYTVHYAYDTYALAHGTGSAVVKQGGKSWYFLTAD 181 Query: 207 YAFGASLEKDTSDIVKANGGTVTGAVKHPLGASDFSSFMLQAQASKAQILGLANAGGDTI 266 YAFGASLEKDT+ +VK++GGTV GAVKHPL ASDFSSFMLQAQ+SKAQI+GLANAGGD I Sbjct: 182 YAFGASLEKDTTAVVKSSGGTVLGAVKHPLNASDFSSFMLQAQSSKAQIIGLANAGGDLI 241 Query: 267 NSIKAANEFGINKTMKLAGLLMFINDVHALTLQVTQGMYLTDGWYWDMNQETRDWSKRYF 326 NS+KAANEFG+ K KLAGLL+FIND+H+LTL+ TQGMYLTD WYWD N E+R W+KRYF Sbjct: 242 NSVKAANEFGVTKNAKLAGLLVFINDIHSLTLKQTQGMYLTDSWYWDQNDESRKWAKRYF 301 Query: 327 AKMKRMPSMLQAADYSATTQYLNAVKASGTDDPDKVIAQMHKTKINDFFAKNGYIRPDGR 386 KMK+ PS LQA DYSA QYL AVK GTDD DKV+ Q+ K K ND +AKN Y+R DGR Sbjct: 302 EKMKKEPSSLQAGDYSAAMQYLAAVKTIGTDDGDKVMEQLRKAKFNDMYAKNAYLRADGR 361 Query: 387 MVHDMYLMEVKKPSESKYPWDYYKVVQTIPAEQAWTTKAESKCSLWK 433 +VHDM L +VK P++SKYPWDY +QTIP EQA+ +KAESKC+LWK Sbjct: 362 VVHDMTLYQVKAPADSKYPWDYLNKIQTIPGEQAFASKAESKCALWK 408 >ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] gb|EGJ09294.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] Length = 402 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/404 (73%), Positives = 346/404 (85%), Gaps = 2/404 (0%) Query: 30 MKVKMTAIAATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMA 89 MK+ A A +++ A G + A AQISG+V++IGLITD+SG+Y DIDG GGVEAI+MA Sbjct: 1 MKLGKIATACSLLLGAAVGTS--AHAQISGDVIRIGLITDMSGLYSDIDGAGGVEAIRMA 58 Query: 90 IADFGGSVNGKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAG 149 IAD GGSV GKKIE++ ADHQNKAD+AA+KAREWFD QG+D+LIGGTNSGTSLAMAKVA Sbjct: 59 IADAGGSVAGKKIEVVFADHQNKADVAAAKAREWFDTQGLDLLIGGTNSGTSLAMAKVAA 118 Query: 150 EKKKTFIAVGGATARLTNEECTPYTIHYAYDTVALAKGTGSAIVKNGGKSWYFLTADYAF 209 EKKK FIAVG AT+ LTN++C YT+H+AYDTVALAKGTG+A+VK GGKSWYFLTADYAF Sbjct: 119 EKKKPFIAVGAATSALTNDQCNAYTVHWAYDTVALAKGTGNAVVKAGGKSWYFLTADYAF 178 Query: 210 GASLEKDTSDIVKANGGTVTGAVKHPLGASDFSSFMLQAQASKAQILGLANAGGDTINSI 269 GA L+ DTS +VKA GG V G+VKHPL A+DFSSF+LQAQASKAQILGLANAGGDTIN+I Sbjct: 179 GAQLQNDTSAVVKAAGGNVVGSVKHPLSATDFSSFLLQAQASKAQILGLANAGGDTINAI 238 Query: 270 KAANEFGINKTMKLAGLLMFINDVHALTLQVTQGMYLTDGWYWDMNQETRDWSKRYFAKM 329 KAANEFGI K+MKLAGLL+FIND+H+L L+ TQGMYLTD WYW+ + ETR W +R+F KM Sbjct: 239 KAANEFGITKSMKLAGLLVFINDIHSLGLKTTQGMYLTDSWYWNRDAETRAWGRRFFEKM 298 Query: 330 KRMPSMLQAADYSATTQYLNAVKASGTDDPDKVIAQMHKTKINDFFAKNGYIRPDGRMVH 389 KRMPS LQA DYSA TQYL AVKA+GTDD DKV+AQM KT++ND FAK+G+IR DGRMVH Sbjct: 299 KRMPSSLQAGDYSAATQYLAAVKATGTDDADKVLAQMRKTRVNDIFAKDGFIRGDGRMVH 358 Query: 390 DMYLMEVKKPSESKYPWDYYKVVQTIPAEQAWTTKAESKCSLWK 433 DMYLM+VK P +S PWDYY VVQT E+AWTTKAESKC+LWK Sbjct: 359 DMYLMQVKAPDKSVEPWDYYNVVQTFKGEEAWTTKAESKCALWK 402 >ref|ZP_01914818.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] gb|EDM84134.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] Length = 401 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 298/395 (75%), Positives = 337/395 (85%) Query: 39 ATVVAACAAGFAGPAAAQISGEVVKIGLITDLSGVYIDIDGQGGVEAIKMAIADFGGSVN 98 AT +AA A AG A AQIS + +KIG+ITD+SG+Y DIDG GGVEA+KMAIADFGG++N Sbjct: 7 ATGLAALFAVVAGSAQAQISNDTIKIGVITDMSGLYADIDGPGGVEAVKMAIADFGGTLN 66 Query: 99 GKKIELITADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTSLAMAKVAGEKKKTFIAV 158 GKKIEL+ ADHQNKADIAASKAREWFD +GVDMLI GTNSGT+LAMAKVA EK+K + Sbjct: 67 GKKIELVFADHQNKADIAASKAREWFDTEGVDMLISGTNSGTALAMAKVAEEKQKPNFVI 126 Query: 159 GGATARLTNEECTPYTIHYAYDTVALAKGTGSAIVKNGGKSWYFLTADYAFGASLEKDTS 218 G TAR+TNEEC PY+IHYAYDTVALAKGTGSA+ K GGK+WYFLTADYAFG SLE DT+ Sbjct: 127 GAGTARITNEECNPYSIHYAYDTVALAKGTGSAVTKQGGKTWYFLTADYAFGTSLETDTT 186 Query: 219 DIVKANGGTVTGAVKHPLGASDFSSFMLQAQASKAQILGLANAGGDTINSIKAANEFGIN 278 +VKANGGTV GA++HPL ASDFSSFMLQAQAS AQILGLANAGGDT+NSIKAANEFG+ Sbjct: 187 AVVKANGGTVKGAIRHPLSASDFSSFMLQAQASGAQILGLANAGGDTVNSIKAANEFGVT 246 Query: 279 KTMKLAGLLMFINDVHALTLQVTQGMYLTDGWYWDMNQETRDWSKRYFAKMKRMPSMLQA 338 +MKLAGLLMFINDVHAL L T+GMYLTD WYWD N ETR WSKR+F KMK+MPS LQA Sbjct: 247 GSMKLAGLLMFINDVHALGLGQTKGMYLTDSWYWDQNDETRKWSKRFFDKMKKMPSSLQA 306 Query: 339 ADYSATTQYLNAVKASGTDDPDKVIAQMHKTKINDFFAKNGYIRPDGRMVHDMYLMEVKK 398 ADYSAT QYLNAVKA+GTDD KV+ + K K+ND +AKNGY R DG M+HDM+LM+VK Sbjct: 307 ADYSATLQYLNAVKAAGTDDGAKVMEALRKQKVNDVYAKNGYYRVDGSMIHDMFLMQVKD 366 Query: 399 PSESKYPWDYYKVVQTIPAEQAWTTKAESKCSLWK 433 P ESK PWDY KVVQ IP EQA+TTKAE+KC+LWK Sbjct: 367 PKESKKPWDYLKVVQAIPGEQAFTTKAETKCALWK 401