BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0006.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774272.1| TRAP-type C4-dicarboxylate transport system ... 747 0.0 ref|ZP_08274275.1| TRAP-type C4-dicarboxylate transport system, ... 729 0.0 gb|EGW61597.1| TRAP dicarboxylate transporter, DctM subunit [Dec... 699 0.0 ref|ZP_03700401.1| TRAP dicarboxylate transporter, DctM subunit ... 694 0.0 ref|YP_002795391.1| TRAP dicarboxylate transporter, DctM subunit... 694 0.0 >ref|YP_003774272.1| TRAP-type C4-dicarboxylate transport system large permease [Herbaspirillum seropedicae SmR1] gb|ADJ62364.1| TRAP-type C4-dicarboxylate transport system, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 426 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/426 (93%), Positives = 415/426 (97%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNA IIFVLLF LMLTGMPISISLGLTVLTFLFTMT+VPIQSVALKLFTGIEKFEIMAIP Sbjct: 1 MNALIIFVLLFALMLTGMPISISLGLTVLTFLFTMTEVPIQSVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFAT+MVGHWHGGLALAGV+ACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 IILPAMV+QGFPN+FGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGL+ Sbjct: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 Query: 181 LAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEA 240 LAFLLG TTW+LARK+NYPRL KA+WAER AAFRKSGWGLFLIVIVMGGIYTG+FTPTEA Sbjct: 181 LAFLLGVTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 Query: 241 AAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 AAMAAVYAF IAVFVYKD+ LKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA Sbjct: 241 AAMAAVYAFFIAVFVYKDLTLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 Query: 301 MAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 MAA ITDSGLGPITFLLVVN+LLLLAGNVMEPSSIVLI+APILFPVAMKLGIDPVHFGIL Sbjct: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTML FLAL+TY P +SLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPALSLWL 420 Query: 421 PNLVFD 426 PNL+++ Sbjct: 421 PNLIYN 426 >ref|ZP_08274275.1| TRAP-type C4-dicarboxylate transport system, large permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32248.1| TRAP-type C4-dicarboxylate transport system, large permease component [Oxalobacteraceae bacterium IMCC9480] Length = 426 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/426 (90%), Positives = 409/426 (96%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNA IIFVLLF LMLTGMPISISLGLTVLTFLFTMTDVPI+SVALKLFTGIEKFEIMAIP Sbjct: 1 MNALIIFVLLFVLMLTGMPISISLGLTVLTFLFTMTDVPIESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFA++MVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFASSMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 IILPAMV+QG+P FGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGV+PGLM Sbjct: 121 IILPAMVKQGYPKSFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVIPGLM 180 Query: 181 LAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEA 240 LAF LG TTWYLARK+NYP+LPKA+WAERG AFRKS WGL LIVIVMGGIY+G FTPTEA Sbjct: 181 LAFFLGLTTWYLARKNNYPKLPKATWAERGIAFRKSAWGLLLIVIVMGGIYSGKFTPTEA 240 Query: 241 AAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 AAMAAVYAFI+AVFVYKDM +KQVPKVLLDSA+MSAMLLYIITNAVLFSFL+TSENIPQ+ Sbjct: 241 AAMAAVYAFIVAVFVYKDMSMKQVPKVLLDSAAMSAMLLYIITNAVLFSFLITSENIPQS 300 Query: 301 MAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 MAA+IT+ G+GPI FLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL Sbjct: 301 MAAVITNMGMGPIGFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWL 420 I+VNMEVGMCHPPVGLNLYVASGITKMGITELT+AV PWLLTML FL L+TYVP ISLWL Sbjct: 361 IIVNMEVGMCHPPVGLNLYVASGITKMGITELTVAVWPWLLTMLAFLGLVTYVPAISLWL 420 Query: 421 PNLVFD 426 PNL+++ Sbjct: 421 PNLIYN 426 >gb|EGW61597.1| TRAP dicarboxylate transporter, DctM subunit [Dechlorosoma suillum PS] Length = 427 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/422 (86%), Positives = 391/422 (92%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNAAIIF LL LMLTGMPISISLGLTVLTFLFTMT VPI+SVALKLFTGIEKFEIMAIP Sbjct: 1 MNAAIIFGLLLALMLTGMPISISLGLTVLTFLFTMTQVPIESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFA+AMVGH++GGL LAGV+ACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFASAMVGHFYGGLGLAGVLACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 I+LPAMVR GFPN+FGAGVITTSGALGILIPPSIVMVMYSV+TNTSVG LFMAGV+PGL+ Sbjct: 121 ILLPAMVRAGFPNRFGAGVITTSGALGILIPPSIVMVMYSVATNTSVGALFMAGVIPGLL 180 Query: 181 LAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEA 240 LAF LG TWY A+K +YPR+PKASW ER AFRKS WGL LIVIVMGGIYTG+FTPTEA Sbjct: 181 LAFTLGMVTWYRAKKFDYPRMPKASWGERWVAFRKSVWGLMLIVIVMGGIYTGMFTPTEA 240 Query: 241 AAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 AAM+AVYAFI+AVFVYKDMGLKQ+PKVLLDSA+MSAMLLYIITNAVLFSFL+T+ENIPQ Sbjct: 241 AAMSAVYAFIVAVFVYKDMGLKQIPKVLLDSANMSAMLLYIITNAVLFSFLMTNENIPQL 300 Query: 301 MAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 +A + D GLGPI FLL VNVLLL+AGN MEPSSIVLIMAPILFPVA+KLGIDPVHFGIL Sbjct: 301 LAEWLLDKGLGPIAFLLAVNVLLLVAGNFMEPSSIVLIMAPILFPVAVKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAV PWLL+ML FL L+TY P +SLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVWPWLLSMLCFLGLVTYWPTLSLWL 420 Query: 421 PN 422 P Sbjct: 421 PR 422 >ref|ZP_03700401.1| TRAP dicarboxylate transporter, DctM subunit [Lutiella nitroferrum 2002] gb|EEG06675.1| TRAP dicarboxylate transporter, DctM subunit [Lutiella nitroferrum 2002] Length = 427 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/422 (84%), Positives = 393/422 (93%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 M+ I+F LL LM+TGMPISISLGLTVLTFLFTMT VPI+SVALKLFTGIEKFEIMAIP Sbjct: 1 MSTLILFGLLIALMITGMPISISLGLTVLTFLFTMTQVPIESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFA++MVGHWHGGL LAGV+ACALFAA+SGSSPA VVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFASSMVGHWHGGLGLAGVLACALFAAISGSSPACVVAIGS 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 IILPAMV+QGFPNKFGAGVITTSGALGILIPPSI MVM+SV+TNTSVG+LFMAGVVPG+M Sbjct: 121 IILPAMVKQGFPNKFGAGVITTSGALGILIPPSIAMVMFSVATNTSVGQLFMAGVVPGIM 180 Query: 181 LAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEA 240 LA LG TTWY ARK+NYPRLPKAS+A+R A R+S WGL LIV+V+GGIY+GIFTPTEA Sbjct: 181 LATSLGVTTWYRARKNNYPRLPKASFAQRMKALRESFWGLSLIVLVIGGIYSGIFTPTEA 240 Query: 241 AAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 AA++AVYAFI+AVF+YKD+ LKQVPKVLLDSASMSAMLLYIITNAVLFSFL+TSE +PQA Sbjct: 241 AAVSAVYAFIVAVFIYKDLNLKQVPKVLLDSASMSAMLLYIITNAVLFSFLMTSEGVPQA 300 Query: 301 MAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 MA+ + D G GPI FLL+VN+LLLLAGNVMEPSSI+LIMAPILFPVA++LGIDPVHFGIL Sbjct: 301 MASWLIDMGFGPIAFLLMVNILLLLAGNVMEPSSIILIMAPILFPVAVQLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELT+AV PWLLTMLVFL L+TYVP ISLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTVAVWPWLLTMLVFLGLVTYVPAISLWL 420 Query: 421 PN 422 P Sbjct: 421 PK 422 >ref|YP_002795391.1| TRAP dicarboxylate transporter, DctM subunit precursor [Laribacter hongkongensis HLHK9] gb|ACO74382.1| TRAP dicarboxylate transporter, DctM subunit precursor [Laribacter hongkongensis HLHK9] Length = 427 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/422 (86%), Positives = 392/422 (92%) Query: 1 MNAAIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 M+A IIF LL LMLTGMPISISLGLTVLTFLFTMTDVPI SVALKLFTGIEKFEIMAIP Sbjct: 1 MSALIIFGLLVLLMLTGMPISISLGLTVLTFLFTMTDVPIASVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFATAMVGHWHGGL LAGVMACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLGLAGVMACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVRQGFPNKFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLM 180 I+LPAM++QGFP++FGAGVITTSGALGILIPPSIVMVMYSV+TNTSVG+LFMAGV+PGLM Sbjct: 121 ILLPAMIKQGFPDRFGAGVITTSGALGILIPPSIVMVMYSVATNTSVGQLFMAGVIPGLM 180 Query: 181 LAFLLGATTWYLARKHNYPRLPKASWAERGAAFRKSGWGLFLIVIVMGGIYTGIFTPTEA 240 LA LG TTW+ ARK+NYPR+PKAS+ ER AFR+S WGL LIV+V+GGIYTGIFTPTEA Sbjct: 181 LAGFLGFTTWWRARKNNYPRMPKASFMERWKAFRESVWGLLLIVVVIGGIYTGIFTPTEA 240 Query: 241 AAMAAVYAFIIAVFVYKDMGLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 AAM+AVYAF++AVFVYKDM L+Q+PK+LLDSA+MSAMLLYIITNAVLFSFL+TSE IPQ Sbjct: 241 AAMSAVYAFLVAVFVYKDMNLRQIPKILLDSANMSAMLLYIITNAVLFSFLMTSEQIPQT 300 Query: 301 MAAMITDSGLGPITFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 MA + G+GPI FLL+VNVLLLLAGNVMEPSSIVLI APILFP+AM LGIDPVHFGIL Sbjct: 301 MAEWMVGQGMGPILFLLMVNVLLLLAGNVMEPSSIVLIFAPILFPMAMHLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLVFLALITYVPQISLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELT AV PWLLTMLVFLAL+TYVP ISLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTKAVWPWLLTMLVFLALVTYVPAISLWL 420 Query: 421 PN 422 P Sbjct: 421 PR 422