BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0003.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 489 e-136 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 453 e-125 ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 393 e-107 ref|ZP_07025073.1| TRAP dicarboxylate transporter, DctP subunit ... 390 e-107 emb|CAM75978.1| Bacterial extracellular solute-binding protein, ... 386 e-105 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/249 (94%), Positives = 241/249 (96%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKFGPLGVKEFEVFDLPYIFP+KEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD Sbjct: 86 MLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 145 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NGFK MSANKPLH PADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD Sbjct: 146 NGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 205 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTENPPSNLYTQKMHEVQKHVTVS+HGYLGYAVIVNKKFWDGLP+DIRT LEGAMKDATK Sbjct: 206 GTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGAMKDATK 265 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 YANAIAQQENDAALAAV+KTGKTT+YRL D EKAEWRKALLPVQ QMA RIGKDLI AVN Sbjct: 266 YANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLIDAVN 325 Query: 241 KEAAALGQK 249 KE+AALGQK Sbjct: 326 KESAALGQK 334 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/249 (87%), Positives = 228/249 (91%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKFGPLGVKEFE+FDLPYIFP K+VLYRVTEGPIGKDLFKKLE KGITGLAYWD Sbjct: 89 MLAPSLAKFGPLGVKEFELFDLPYIFPGKDVLYRVTEGPIGKDLFKKLESKGITGLAYWD 148 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NGFK MSANKPL PADF+GLKMRIQSSKVLDA+MRALGANPQVLAFSEVYQALQTGVVD Sbjct: 149 NGFKVMSANKPLKTPADFKGLKMRIQSSKVLDAEMRALGANPQVLAFSEVYQALQTGVVD 208 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTENPPSNLYTQKMHEVQ +VTVS+HGYLGYAVIVNKKFWDGLPADIRT LE AMKDATK Sbjct: 209 GTENPPSNLYTQKMHEVQSNVTVSNHGYLGYAVIVNKKFWDGLPADIRTGLEAAMKDATK 268 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 YANAIAQQEND A+ AV+K+GKT +Y LNDKEKAEWRKALLPVQ M RIGKDLI AV Sbjct: 269 YANAIAQQENDKAMEAVRKSGKTEVYVLNDKEKAEWRKALLPVQKDMESRIGKDLITAVG 328 Query: 241 KEAAALGQK 249 KEA LG K Sbjct: 329 KEATTLGYK 337 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/249 (75%), Positives = 212/249 (85%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKFGPLG +EFEVFDLPYIFP K VL RVTEGPIG+ LF+KLE KGI GLAYWD Sbjct: 94 MLAPSLAKFGPLGAREFEVFDLPYIFPDKAVLKRVTEGPIGQGLFQKLEGKGIKGLAYWD 153 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NG K M+AN+PLH ADFR LKMRIQSSKVLD Q RAL ANPQVLAFSEVYQA+QTGVVD Sbjct: 154 NGMKVMTANRPLHKVADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVD 213 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 G+EN PSN+YTQKMHEVQ ++TVSDHGY+GYAVIVNKKFW+ LPADIR+ LE AMK AT Sbjct: 214 GSENTPSNVYTQKMHEVQSNLTVSDHGYIGYAVIVNKKFWEALPADIRSQLEAAMKQATL 273 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 YAN IAQ+END ALAA++ +GKT +Y L+++EKAEWR+ALLPV MA R+G DLI A+ Sbjct: 274 YANTIAQKENDDALAAIKASGKTRVYTLSEQEKAEWRRALLPVHKSMAARVGADLIEAIY 333 Query: 241 KEAAALGQK 249 KE+ A G K Sbjct: 334 KESEAAGVK 342 >ref|ZP_07025073.1| TRAP dicarboxylate transporter, DctP subunit [Afipia sp. 1NLS2] gb|EFI52215.1| TRAP dicarboxylate transporter, DctP subunit [Afipia sp. 1NLS2] Length = 334 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/248 (76%), Positives = 209/248 (84%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKFGPLGVKEFEVFD+PYI P K L RVT G +GK L KLEPKGI GLA+WD Sbjct: 87 MLAPSLAKFGPLGVKEFEVFDIPYIMPDKAALNRVTHGEVGKKLLAKLEPKGIKGLAFWD 146 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NGFK MSANKPLH P DFRGLKMRIQSSKVL+AQMRALG+ PQV+AFSEVYQALQTGVVD Sbjct: 147 NGFKIMSANKPLHKPEDFRGLKMRIQSSKVLEAQMRALGSIPQVMAFSEVYQALQTGVVD 206 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTENPPSN+YTQKM+EVQKH T+S+HGYLGYAVIVNKKFWDGLPAD+R LE AM DAT Sbjct: 207 GTENPPSNMYTQKMNEVQKHATLSNHGYLGYAVIVNKKFWDGLPADVRGQLEKAMADATT 266 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 YAN IAQ+END ALAA+QK G TT Y+L +E A WRKAL PV ++ R+GK+LIA Sbjct: 267 YANDIAQKENDDALAAMQKAGTTTFYKLTPEETAAWRKALDPVADEVGSRVGKELIAEFR 326 Query: 241 KEAAALGQ 248 KEAAA G+ Sbjct: 327 KEAAASGK 334 >emb|CAM75978.1| Bacterial extracellular solute-binding protein, family 7 [Magnetospirillum gryphiswaldense MSR-1] Length = 335 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/249 (73%), Positives = 210/249 (84%) Query: 1 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWD 60 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVL VT+GP+G+ L KKLE KGI GLAYWD Sbjct: 86 MLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLRAVTDGPVGQGLLKKLETKGIRGLAYWD 145 Query: 61 NGFKGMSANKPLHVPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVD 120 NGFK +SANKP+ PAD +G+K+RIQSSKVLDAQMRAL A PQ +AFSEVYQALQTGVVD Sbjct: 146 NGFKVLSANKPIKTPADLKGVKLRIQSSKVLDAQMRALAALPQSMAFSEVYQALQTGVVD 205 Query: 121 GTENPPSNLYTQKMHEVQKHVTVSDHGYLGYAVIVNKKFWDGLPADIRTALEGAMKDATK 180 GTENPPSN++TQKMHEVQKH TV++HGYLGYAVIVNKKFWDGLP D R LEGAM +A++ Sbjct: 206 GTENPPSNMFTQKMHEVQKHATVTNHGYLGYAVIVNKKFWDGLPTDTRAVLEGAMNEASR 265 Query: 181 YANAIAQQENDAALAAVQKTGKTTIYRLNDKEKAEWRKALLPVQTQMADRIGKDLIAAVN 240 +ANAIAQQEND +LAA++ +GKT Y+ +E WRKALLPV +M R+GK++I AV Sbjct: 266 FANAIAQQENDDSLAAMKASGKTEFYQPTKEELEAWRKALLPVHAEMEGRVGKEIIQAVY 325 Query: 241 KEAAALGQK 249 EA LG K Sbjct: 326 AEATKLGFK 334