BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0002.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ...   139   2e-31
ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ...   122   2e-26
ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm...   115   1e-24
ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Ma...   114   6e-24
emb|CAM75978.1| Bacterial extracellular solute-binding protein, ...   108   2e-22

>ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic
          component protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 73/81 (90%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVK 60
          MKLKS++ A+ AA I++ NAFAQ PI+IKFSHVVANDTPKGK AERFKELAEKATKGRVK
Sbjct: 1  MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVK 60

Query: 61 VEVYPNSTLYKDKEELEALXC 81
          +EVYPNSTLYKDKEELEAL  
Sbjct: 61 IEVYPNSTLYKDKEELEALQL 81


>ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic
          component [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic
          component [Oxalobacteraceae bacterium IMCC9480]
          Length = 337

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 64/75 (85%)

Query: 7  VFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVKVEVYPN 66
            A++AA +++GNA AQ PI+IKFSHVVANDTPKGK AERFKEL EK  KGRVKVE+YPN
Sbjct: 10 TLAMSAALLMSGNAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLKGRVKVELYPN 69

Query: 67 STLYKDKEELEALXC 81
          STLYKDKEELEAL  
Sbjct: 70 STLYKDKEELEALQL 84


>ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein
          [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 56/57 (98%)

Query: 23 QAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEAL 79
          Q PIIIKFSHVVANDTPKGKGAERFKELAEKAT+GRVKVEVYPNSTLYKDKEELEAL
Sbjct: 31 QQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGRVKVEVYPNSTLYKDKEELEAL 87


>ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum
          magneticum AMB-1]
 dbj|BAE49699.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum
          magneticum AMB-1]
          Length = 337

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQA--PIIIKFSHVVANDTPKGKGAERFKELAEKATKGR 58
          MKL +L+    AA ++AG+A AQ   PI+IKFSHVVA DTPKGKGAE FK+LAE+ TKGR
Sbjct: 1  MKLGTLIAGAIAACVLAGSAMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEERTKGR 60

Query: 59 VKVEVYPNSTLYKDKEELEAL 79
          VKVEVYPNS LYKDKEE+EAL
Sbjct: 61 VKVEVYPNSQLYKDKEEMEAL 81


>emb|CAM75978.1| Bacterial extracellular solute-binding protein, family 7
          [Magnetospirillum gryphiswaldense MSR-1]
          Length = 335

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 63/79 (79%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVK 60
          MK ++L+  L A  + +G+A A  PI+IKFSHVVA DTPKGK AE FK+LAE+ TKG VK
Sbjct: 1  MKFRTLLGCLVAGVVASGSALAADPIVIKFSHVVAPDTPKGKAAEMFKKLAEERTKGAVK 60

Query: 61 VEVYPNSTLYKDKEELEAL 79
          VEVYPNS LYKDKEE+EAL
Sbjct: 61 VEVYPNSQLYKDKEEMEAL 79