BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0153.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Ja... 334 5e-90 ref|YP_004753904.1| ribosomal RNA small subunit methyltransferas... 334 5e-90 ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [He... 317 1e-84 ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspiril... 315 2e-84 ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase... 288 2e-76 >ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp. Marseille] gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 241 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 159/208 (76%), Positives = 183/208 (87%) Query: 4 GNPITLFNGQGGEYTAVITQMEKKRVHAEVKTFSPREAELSYAVTLAQALPEASKMDWII 63 G+ ITLFNG+GGEYTA IT +EKKRV AE+K F+PRE EL YAVT+AQALPEASKMDWII Sbjct: 34 GDHITLFNGEGGEYTATITTIEKKRVTAEIKLFTPREVELPYAVTVAQALPEASKMDWII 93 Query: 64 EKAMELGVAAIQPLAAQRCVVRLNSERAEKKQSHWQGIIQAAAEQSGRNRLAHLAPLTEF 123 EKA+ELGV AIQPLA+QRCVVRL++ERA KK HWQG+I AA+EQSGRNRLA LA +F Sbjct: 94 EKAVELGVHAIQPLASQRCVVRLSAERAAKKMQHWQGVIVAASEQSGRNRLAALAEPVDF 153 Query: 124 NSWIGQSDLHKRILLSPRGEQSLSDWARHHPAQALSLIVGPEGGFTEAEENLACDQGALM 183 N W+ Q DLHKRILLSPR EQSLSDWARHHP Q+++L++GPEGGFT+ EE+LA QGALM Sbjct: 154 NQWVQQKDLHKRILLSPRAEQSLSDWARHHPPQSVALMIGPEGGFTDKEEDLALAQGALM 213 Query: 184 LSIGPRVLRTETAGLGALAAINAIWGEM 211 LS+GPRVLRTETAGL ALAA+NA+WGEM Sbjct: 214 LSMGPRVLRTETAGLSALAALNAVWGEM 241 >ref|YP_004753904.1| ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] gb|AEK63081.1| Ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] Length = 241 Score = 334 bits (856), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 171/209 (81%), Positives = 188/209 (89%) Query: 3 LGNPITLFNGQGGEYTAVITQMEKKRVHAEVKTFSPREAELSYAVTLAQALPEASKMDWI 62 L PITLFNG+GGEYTA I +EKKRV+ E+KTFSPREAEL YA+TLAQALPE+SK+DWI Sbjct: 33 LAAPITLFNGEGGEYTATIVSIEKKRVNVEIKTFSPREAELPYAITLAQALPESSKLDWI 92 Query: 63 IEKAMELGVAAIQPLAAQRCVVRLNSERAEKKQSHWQGIIQAAAEQSGRNRLAHLAPLTE 122 IEKA+ELGVAAIQPLAAQRCVVRLNSERAEKKQ+HWQ +I AAAEQSGRNRL L+ L+ Sbjct: 93 IEKAVELGVAAIQPLAAQRCVVRLNSERAEKKQNHWQAVIVAAAEQSGRNRLPTLSTLSP 152 Query: 123 FNSWIGQSDLHKRILLSPRGEQSLSDWARHHPAQALSLIVGPEGGFTEAEENLACDQGAL 182 FN W Q DLHKRILLSPRGEQSLSDWARH P QAL+L++GPEGGFTEAEENLAC QGAL Sbjct: 153 FNDWAQQQDLHKRILLSPRGEQSLSDWARHQPPQALALLIGPEGGFTEAEENLACSQGAL 212 Query: 183 MLSIGPRVLRTETAGLGALAAINAIWGEM 211 MLS+GPR+LRTETAGL ALAAINAIWGEM Sbjct: 213 MLSMGPRILRTETAGLAALAAINAIWGEM 241 >ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas arsenicoxydans] emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 241 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/208 (72%), Positives = 174/208 (83%) Query: 4 GNPITLFNGQGGEYTAVITQMEKKRVHAEVKTFSPREAELSYAVTLAQALPEASKMDWII 63 G+ ITLFNG+GGEYTA I+ +EKKRV AE+K F PRE EL YA+TLAQALPEASKMDWII Sbjct: 34 GDAITLFNGEGGEYTATISTIEKKRVTAEIKIFEPREVELPYAITLAQALPEASKMDWII 93 Query: 64 EKAMELGVAAIQPLAAQRCVVRLNSERAEKKQSHWQGIIQAAAEQSGRNRLAHLAPLTEF 123 EKA+ELG A+QPLA+QRCVVRL++ERA KK HWQGII AA+EQSGRNRL LA +F Sbjct: 94 EKAVELGAHALQPLASQRCVVRLSAERAAKKMQHWQGIIIAASEQSGRNRLTTLAEPADF 153 Query: 124 NSWIGQSDLHKRILLSPRGEQSLSDWARHHPAQALSLIVGPEGGFTEAEENLACDQGALM 183 N W Q DLH RI+LSPR EQSLSDWARHHP Q+++L++GPEGGFTE EE A GALM Sbjct: 154 NQWATQQDLHVRIMLSPRAEQSLSDWARHHPPQSVALMIGPEGGFTEKEETQAIANGALM 213 Query: 184 LSIGPRVLRTETAGLGALAAINAIWGEM 211 LS+GPRVLRTETAG+ A+AA+NA+WG M Sbjct: 214 LSMGPRVLRTETAGMAAIAALNAVWGAM 241 >ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1] gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 158/211 (74%), Positives = 184/211 (87%) Query: 1 MQLGNPITLFNGQGGEYTAVITQMEKKRVHAEVKTFSPREAELSYAVTLAQALPEASKMD 60 +Q G+ ITLFNG+GGEYTA ++ +EKKR HA+VKTFSPREAEL YA+TLAQALPE +KMD Sbjct: 31 LQPGDAITLFNGEGGEYTATLSAVEKKRAHAQVKTFSPREAELPYALTLAQALPEGAKMD 90 Query: 61 WIIEKAMELGVAAIQPLAAQRCVVRLNSERAEKKQSHWQGIIQAAAEQSGRNRLAHLAPL 120 WI+EKA+ELG A+QPLAAQRCVVRL+ ERAEKKQ+HWQGII AAAEQ GRNRL HL + Sbjct: 91 WIVEKAVELGATALQPLAAQRCVVRLSGERAEKKQAHWQGIIHAAAEQCGRNRLPHLGEV 150 Query: 121 TEFNSWIGQSDLHKRILLSPRGEQSLSDWARHHPAQALSLIVGPEGGFTEAEENLACDQG 180 TEF WI QSDLH+RILLSPRG + LS WARHHP QA++L+VGPEGGF++ EE LAC QG Sbjct: 151 TEFKRWIAQSDLHRRILLSPRGAEPLSGWARHHPPQAVTLVVGPEGGFSDEEEELACAQG 210 Query: 181 ALMLSIGPRVLRTETAGLGALAAINAIWGEM 211 ALMLS+G RVLRTETAGL ALAA+NA+WGE+ Sbjct: 211 ALMLSMGSRVLRTETAGLAALAALNAVWGEL 241 >ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 174/210 (82%) Query: 1 MQLGNPITLFNGQGGEYTAVITQMEKKRVHAEVKTFSPREAELSYAVTLAQALPEASKMD 60 +Q G+ +TLFNG G EY A ++ +EKKRV E+KT + R EL YA+TLAQALPEASKMD Sbjct: 31 LQAGSMVTLFNGDGNEYVATLSVLEKKRVTVEIKTCTERSVELPYAITLAQALPEASKMD 90 Query: 61 WIIEKAMELGVAAIQPLAAQRCVVRLNSERAEKKQSHWQGIIQAAAEQSGRNRLAHLAPL 120 WIIEKA+ELG A IQPL+AQRCVVRL++ERAEK+Q HWQGII +A+EQSGRNRLA LAP+ Sbjct: 91 WIIEKAVELGAAGIQPLSAQRCVVRLSAERAEKRQLHWQGIIVSASEQSGRNRLAQLAPV 150 Query: 121 TEFNSWIGQSDLHKRILLSPRGEQSLSDWARHHPAQALSLIVGPEGGFTEAEENLACDQG 180 ++F+ WI Q D+HKRILL+PR +QSL+DWARH P QA++L++GPEGG ++ EENLA G Sbjct: 151 SDFSRWIAQQDIHKRILLTPRADQSLADWARHQPPQAVTLLIGPEGGLSDDEENLAIAHG 210 Query: 181 ALMLSIGPRVLRTETAGLGALAAINAIWGE 210 A+ LS+GPRVLRTETAGL ALA + WG+ Sbjct: 211 AIALSMGPRVLRTETAGLAALAMLAGAWGD 240