BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0124.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase [Herbaspiri... 290 3e-76 ref|YP_004754638.1| long-chain-fatty-acid--CoA ligase [Collimona... 282 8e-74 ref|ZP_02382310.1| acyl-CoA synthetase [Burkholderia ubonensis Bu] 275 1e-71 ref|ZP_08276346.1| Long-chain-fatty-acid-CoA ligase (Long-chain ... 271 1e-70 ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase [Herminiim... 270 2e-70 >ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ65341.1| long-chain-fatty-acid-CoA ligase protein [Herbaspirillum seropedicae SmR1] Length = 566 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 134/152 (88%), Positives = 142/152 (93%), Gaps = 2/152 (1%) Query: 228 PQVMAGYWNRPDETEKVMTPDGFFKSGDIGIMDERGYTRIVDRKKDMILVSGFNVYPNEI 287 PQVM GYW RPDET KVMTPDGFFK+GDIG+MDERGYT+IVDRKKDMILVSGFNVYPNE+ Sbjct: 415 PQVMPGYWQRPDETAKVMTPDGFFKTGDIGVMDERGYTKIVDRKKDMILVSGFNVYPNEV 474 Query: 288 EGVVAAHPGVLECACVGVPDEHTGEAVKLFVVRKDKSLTAEQLMAYCKEQFTGYKKPKYI 347 EGVVA HPGVLECACVGVPDEHTGEAVKLFVVRKDK+L+A QLM YCKEQFTGYKKPKYI Sbjct: 475 EGVVAQHPGVLECACVGVPDEHTGEAVKLFVVRKDKTLSAAQLMDYCKEQFTGYKKPKYI 534 Query: 348 EFRDELPKTNVGKILRRELRDE--KKTEKKAA 377 EFRDELPKTNVGKILRRELRDE K +K+AA Sbjct: 535 EFRDELPKTNVGKILRRELRDEPAKAQQKQAA 566 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/104 (73%), Positives = 91/104 (87%) Query: 119 LKDSGAEAIFVLENFACTLAKVIANTDVRHVVVASMGEMLGGLKGAIANLVVRHVKKLVP 178 LKDSGAEAIFVLENFACTL KV+A+T+++H+VVASMGE+LG LKG + NLVVRHVKKLVP Sbjct: 116 LKDSGAEAIFVLENFACTLQKVVAHTNIKHIVVASMGELLGALKGTLVNLVVRHVKKLVP 175 Query: 179 PFSLPQSITFKQALSRGHGRTPAPIEVGHDDVAFLQYTGGTTGV 222 +SLP +ITF QALS+ G+T P+ + HDD+AFLQYTGGTTGV Sbjct: 176 AWSLPNAITFSQALSQARGKTLQPVTLTHDDIAFLQYTGGTTGV 219 >ref|YP_004754638.1| long-chain-fatty-acid--CoA ligase [Collimonas fungivorans Ter331] gb|AAT42425.1| acyl-CoA synthetase [Collimonas fungivorans Ter331] gb|AEK63815.1| Long-chain-fatty-acid--CoA ligase [Collimonas fungivorans Ter331] Length = 568 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 129/150 (86%), Positives = 136/150 (90%) Query: 228 PQVMAGYWNRPDETEKVMTPDGFFKSGDIGIMDERGYTRIVDRKKDMILVSGFNVYPNEI 287 PQVM GYWNR DET KVMT DGFFKSGDIGIMDERGYT+IVDRKKDMILVSGFNVYPNE+ Sbjct: 418 PQVMRGYWNRDDETAKVMTADGFFKSGDIGIMDERGYTKIVDRKKDMILVSGFNVYPNEV 477 Query: 288 EGVVAAHPGVLECACVGVPDEHTGEAVKLFVVRKDKSLTAEQLMAYCKEQFTGYKKPKYI 347 EGVV HPGVLECACVGVPDEH GE VK+FVVRKD SLTAEQLMAYC+EQ TGYK+PKYI Sbjct: 478 EGVVVQHPGVLECACVGVPDEHAGEVVKIFVVRKDPSLTAEQLMAYCREQLTGYKRPKYI 537 Query: 348 EFRDELPKTNVGKILRRELRDEKKTEKKAA 377 EFR +LPKTNVGKILRRELRDEK E+K A Sbjct: 538 EFRTDLPKTNVGKILRRELRDEKPAEQKQA 567 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/135 (54%), Positives = 90/135 (66%), Gaps = 14/135 (10%) Query: 88 FIVVATEPGFTDDLISRALDSGAEAIFVLEXLKDSGAEAIFVLENFACTLAKVIANTDVR 147 +IVV P +T R L+ L DSGAEAIF+LENFA TL +VIA T V+ Sbjct: 102 YIVVNVNPLYT----PRELE---------HQLNDSGAEAIFILENFATTLQQVIARTKVK 148 Query: 148 HVVVASMGEMLGGLKGAIANLVVRHVKKLVPPFSLPQSITFKQALSRGHGRTPAPIEVGH 207 HVVVASMG+++G +KG + NLVVRHVKK+VP FSLP S+ F LS+G P+ + Sbjct: 149 HVVVASMGDLMG-VKGLVVNLVVRHVKKMVPSFSLPGSVPFNSVLSQGASLQLKPVALTP 207 Query: 208 DDVAFLQYTGGTTGV 222 DD AFLQYTGGTTGV Sbjct: 208 DDTAFLQYTGGTTGV 222 >ref|ZP_02382310.1| acyl-CoA synthetase [Burkholderia ubonensis Bu] Length = 561 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 126/165 (76%), Positives = 141/165 (85%), Gaps = 3/165 (1%) Query: 205 VGHDDVAFLQYTGGTTGVRFFFXPQVMAGYWNRPDETEKVMTPDGFFKSGDIGIMDERGY 264 +G +D Q G +R PQVMAGYWNRPDET KVMTPDGFFKSGD+G+MDE G+ Sbjct: 395 LGENDEPVAQGQPGEIAIR---GPQVMAGYWNRPDETAKVMTPDGFFKSGDVGVMDEHGF 451 Query: 265 TRIVDRKKDMILVSGFNVYPNEIEGVVAAHPGVLECACVGVPDEHTGEAVKLFVVRKDKS 324 RIVDRKKDMILVSGFNVYPNEIE VVAAHPGV+ECACVGVPD ++GEAVKLFVVR+D + Sbjct: 452 VRIVDRKKDMILVSGFNVYPNEIENVVAAHPGVVECACVGVPDSNSGEAVKLFVVRRDPA 511 Query: 325 LTAEQLMAYCKEQFTGYKKPKYIEFRDELPKTNVGKILRRELRDE 369 LT E LMAYCK++FTGYKKPKYIEFRD LPK+N+GKILRRELRDE Sbjct: 512 LTTEALMAYCKKEFTGYKKPKYIEFRDSLPKSNIGKILRRELRDE 556 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 64/104 (61%), Positives = 76/104 (73%) Query: 119 LKDSGAEAIFVLENFACTLAKVIANTDVRHVVVASMGEMLGGLKGAIANLVVRHVKKLVP 178 L+DSGAEAI VLENFA TL +VIA T VRHV VAS+G++LG ++G + N V R VKKLVP Sbjct: 116 LRDSGAEAIVVLENFATTLQQVIARTGVRHVAVASLGDLLGPVRGMVVNFVARRVKKLVP 175 Query: 179 PFSLPQSITFKQALSRGHGRTPAPIEVGHDDVAFLQYTGGTTGV 222 P+ LP + F+ AL G P + HDDVAFLQYTGGTTGV Sbjct: 176 PYRLPGATPFRTALRDGARHPFQPAALNHDDVAFLQYTGGTTGV 219 >ref|ZP_08276346.1| Long-chain-fatty-acid-CoA ligase (Long-chain acyl-CoA synthetase) [Oxalobacteraceae bacterium IMCC9480] gb|EGF30182.1| Long-chain-fatty-acid-CoA ligase (Long-chain acyl-CoA synthetase) [Oxalobacteraceae bacterium IMCC9480] Length = 199 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 125/144 (86%), Positives = 132/144 (91%) Query: 228 PQVMAGYWNRPDETEKVMTPDGFFKSGDIGIMDERGYTRIVDRKKDMILVSGFNVYPNEI 287 PQVMAGYWN PDET KVMT DGFFKSGDIGIMDERGY +IVDRKKDMILVSGFNVYPNEI Sbjct: 54 PQVMAGYWNNPDETAKVMTADGFFKSGDIGIMDERGYIKIVDRKKDMILVSGFNVYPNEI 113 Query: 288 EGVVAAHPGVLECACVGVPDEHTGEAVKLFVVRKDKSLTAEQLMAYCKEQFTGYKKPKYI 347 EG++A HPGVLE ACVGVPDEH+GEAVKL+VVRKD +LT EQLM YCKE FT YKKPKYI Sbjct: 114 EGILAMHPGVLESACVGVPDEHSGEAVKLYVVRKDPALTVEQLMEYCKENFTAYKKPKYI 173 Query: 348 EFRDELPKTNVGKILRRELRDEKK 371 EFR +LPKTNVGKILRRELRDEKK Sbjct: 174 EFRTDLPKTNVGKILRRELRDEKK 197 >ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase [Herminiimonas arsenicoxydans] emb|CAL60450.1| Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) [Herminiimonas arsenicoxydans] Length = 560 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 123/145 (84%), Positives = 132/145 (91%) Query: 228 PQVMAGYWNRPDETEKVMTPDGFFKSGDIGIMDERGYTRIVDRKKDMILVSGFNVYPNEI 287 PQVMAGYWN P ET + MT DGFFK+GDIG+MD RGYTRIVDRKKDMILVSGFNVYP+EI Sbjct: 415 PQVMAGYWNNPAETAQAMTADGFFKTGDIGVMDARGYTRIVDRKKDMILVSGFNVYPSEI 474 Query: 288 EGVVAAHPGVLECACVGVPDEHTGEAVKLFVVRKDKSLTAEQLMAYCKEQFTGYKKPKYI 347 E VVA HPGVLECAC+GVPDEHTGEAVKLFVVR+D +LTAE LMA+CKEQFTGYKKPK I Sbjct: 475 ENVVAGHPGVLECACIGVPDEHTGEAVKLFVVRRDPALTAEALMAFCKEQFTGYKKPKMI 534 Query: 348 EFRDELPKTNVGKILRRELRDEKKT 372 EFR ELPK+NVGKILRRELRDE KT Sbjct: 535 EFRTELPKSNVGKILRRELRDEIKT 559 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 2/98 (2%) Query: 119 LKDSGAEAIFVLENFACTLAKVIANTDVRHVVVASMGEMLGGLKGAIANLVVRHVKKLVP 178 L DSGAEAI +LENFA TL K+I +T ++HVVVA+MG+MLGGLKG + N VVRHVKK+VP Sbjct: 116 LVDSGAEAIIILENFATTLEKIIVSTQIKHVVVATMGDMLGGLKGLLVNFVVRHVKKMVP 175 Query: 179 PFSLPQSITFKQALSR-GHGRTPAPIEVGHDDVAFLQY 215 FSLPQ+++FK L++ H P+ +G D+AFLQY Sbjct: 176 AFSLPQAVSFKDVLAQAAHMHLQRPL-LGPQDIAFLQY 212