BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0119.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01545779.1| putative integral membrane protein [Stappia a...   116   9e-25
ref|ZP_01112969.1| putative integral membrane protein [Reinekea ...   115   2e-24
ref|ZP_05114614.1| conserved domain protein, putative [Labrenzia...   112   2e-23
ref|YP_522849.1| hypothetical protein Rfer_1586 [Rhodoferax ferr...   111   4e-23
ref|YP_004302617.1| hypothetical protein SL003B_0888 [Polymorphu...   107   8e-22

>ref|ZP_01545779.1| putative integral membrane protein [Stappia aggregata IAM 12614]
 gb|EAV45708.1| putative integral membrane protein [Stappia aggregata IAM 12614]
          Length = 254

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 2   IQDPLFYAAAIPAVLIVGISKSGLGGGSLGILSIPILSLVASPSVGAAIMLPLLIAMDIM 61
           I DP FYAAAIP+V +VG+SK G GG +  +L +PI++LV SP   A IMLP+LI MDI+
Sbjct: 4   ISDPWFYAAAIPSVFLVGLSKGGFGG-TFAMLGVPIMALVISPLQAAGIMLPILIVMDIV 62

Query: 62  GLITFRGKGDLRNLRILIPAALVGIAIGALTFRFTSDAMLRGLIGMLSIGFVVQRLLGR 120
            LI +RG+ D ++L IL+PAA++GI IG  T  + +DA +  LIG++S+ FV   L  +
Sbjct: 63  ALIAYRGRADWKSLSILLPAAVIGIGIGWATAAYVNDAFVIFLIGIMSLAFVADYLFKQ 121


>ref|ZP_01112969.1| putative integral membrane protein [Reinekea sp. MED297]
 gb|EAR11433.1| putative integral membrane protein [Reinekea sp. MED297]
          Length = 254

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 1/112 (0%)

Query: 1   LIQDPLFYAAAIPAVLIVGISKSGLGGGSLGILSIPILSLVASPSVGAAIMLPLLIAMDI 60
           LI DPLFY  AIPAVLI G++K G GG ++ I+S+P++SL  SP V AAI+LP+L  MD+
Sbjct: 2   LIVDPLFYFCAIPAVLIFGMAKGGFGG-AVSIVSVPLMSLAVSPPVAAAILLPILCVMDL 60

Query: 61  MGLITFRGKGDLRNLRILIPAALVGIAIGALTFRFTSDAMLRGLIGMLSIGF 112
           + L  + G+  + NL+I+IP ALVGI IGALTFR+ S+A +R LIG +++ F
Sbjct: 61  LALKKYWGQWHVLNLKIMIPGALVGIFIGALTFRYLSEAHIRILIGGIALVF 112


>ref|ZP_05114614.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gb|EEE45213.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 254

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 1/120 (0%)

Query: 1   LIQDPLFYAAAIPAVLIVGISKSGLGGGSLGILSIPILSLVASPSVGAAIMLPLLIAMDI 60
           LI DP FYAAA+PAV+ VG+SK G GG +  +L +PI+SLV SP   A IMLP+L+ MD 
Sbjct: 3   LITDPWFYAAAVPAVICVGLSKGGFGG-TFAMLGVPIMSLVISPLQAAGIMLPILLVMDA 61

Query: 61  MGLITFRGKGDLRNLRILIPAALVGIAIGALTFRFTSDAMLRGLIGMLSIGFVVQRLLGR 120
           + L+ ++GK D R+L IL+PAA++GI IG  T  + +D  +  +IG++S+ FV   +  R
Sbjct: 62  VALMAYKGKADWRSLAILLPAAMLGIGIGWGTAAYVNDTFVTLMIGVISLAFVADYVFKR 121


>ref|YP_522849.1| hypothetical protein Rfer_1586 [Rhodoferax ferrireducens T118]
 gb|ABD69318.1| protein of unknown function DUF81 [Rhodoferax ferrireducens T118]
          Length = 251

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 1   LIQDPLFYAAAIPAVLIVGISKSGLGGGSLGILSIPILSLVASPSVGAAIMLPLLIAMDI 60
           +I DP FYA  +PAVL++G+SKSG G G  G L++PI++L  S    AAI++P+L+ MDI
Sbjct: 5   IITDPYFYAVTVPAVLLLGVSKSGFGAG-FGSLAVPIMALAVSVPQAAAILMPVLLLMDI 63

Query: 61  MGLITFRGKGDLRNLRILIPAALVGIAIGALTFRFTSDAMLRGLIGMLSIGFVVQRLL 118
           +G+  FR   DL+ L+ LIP  LVGI IGAL F+      + G++G+ ++GF+ QRLL
Sbjct: 64  LGMAAFRKDFDLKLLKFLIPCGLVGIVIGALLFKLLDPHTVAGIVGLFTLGFLAQRLL 121


>ref|YP_004302617.1| hypothetical protein SL003B_0888 [Polymorphum gilvum SL003B-26A1]
 gb|ADZ69317.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
          Length = 254

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 2   IQDPLFYAAAIPAVLIVGISKSGLGGGSLGILSIPILSLVASPSVGAAIMLPLLIAMDIM 61
           I DP+FYAAAIPAV++ G+SK G GG S+G+L++P+++LV  P   A IMLP+L+ MD +
Sbjct: 4   ITDPIFYAAAIPAVILAGLSKGGFGG-SIGMLAVPLMALVIPPLQAAGIMLPILLVMDAV 62

Query: 62  GLITFRGKGDLRNLRILIPAALVGIAIGALTFRFTSDAMLRGLIGMLSIGFVVQRLLG 119
           GL  +RG  D R L IL+PA + G+ IG  T  +  DA +R ++G++++ FV   LLG
Sbjct: 63  GLFAYRGTFDRRTLLILLPAGVAGVGIGWATAAWVEDAHVRLIVGVIALLFVADYLLG 120