BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0102.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777256.1| LysR family transcription regulator protein ...   212   2e-53
ref|YP_004476029.1| LysR family transcriptional regulator [Pseud...   137   5e-31
ref|YP_004378053.1| LysR family transcription regulator protein ...   132   2e-29
ref|YP_003773579.1| LysR family transcription regulator protein ...   130   9e-29
ref|YP_001863148.1| LysR family transcriptional regulator [Burkh...   129   1e-28

>ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65348.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 111/118 (94%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           LPSV +IVSRLRF+QVALLTALDEQGSLHKAAEVMHMTQPAATKALHEME ALGVTLFDR
Sbjct: 20  LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDR 79

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAPDPXRA 118
           S RGIEATELGRCVIRYARLIQSD++NLRDELQ M++G+GGRL+IGTIMGAAP   RA
Sbjct: 80  SPRGIEATELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIGTIMGAAPFVTRA 137


>ref|YP_004476029.1| LysR family transcriptional regulator [Pseudomonas fulva 12-X]
 gb|AEF23935.1| transcriptional regulator, LysR family [Pseudomonas fulva 12-X]
          Length = 318

 Score =  137 bits (346), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 96/118 (81%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           L S+ A+VSRLR KQ+ LL ALDEQGSLHKAA+V+ ++QP ATKAL+E+ESA G  LF R
Sbjct: 6   LASLPALVSRLRLKQLRLLIALDEQGSLHKAADVVAISQPGATKALNEIESAFGTRLFTR 65

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAPDPXRA 118
           +++G+EA +LGRC IRYARLI SD+++LR+E+ G+L GQGGRL +G IMGA P   RA
Sbjct: 66  TSQGLEANDLGRCAIRYARLIHSDLAHLREEMLGILQGQGGRLVVGVIMGAVPHLTRA 123


>ref|YP_004378053.1| LysR family transcription regulator protein [Pseudomonas mendocina
           NK-01]
 gb|AEB56301.1| LysR family transcription regulator protein [Pseudomonas mendocina
           NK-01]
          Length = 310

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 92/113 (81%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           LPSVS+I SRLRF+Q+ LL AL EQGSL KAAE++ ++QP ATKAL E+E+ LG  LF R
Sbjct: 2   LPSVSSIFSRLRFRQLRLLIALGEQGSLIKAAELVSISQPGATKALQEIETTLGAPLFVR 61

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAP 113
           + RG+EA ELG C IRYA+LIQ+D+++LR+E+ G+L G GGRLS+G IMGA P
Sbjct: 62  TNRGLEANELGHCAIRYAKLIQTDLTHLREEMLGILQGHGGRLSVGVIMGAVP 114


>ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61671.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 314

 Score =  130 bits (326), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 90/113 (79%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           LPS+++I SRL  +Q+ LL AL + GSL KAAE + +TQP A+KAL E+ES LGV LF R
Sbjct: 5   LPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTR 64

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAP 113
           + RG+E TELG CVIRYARLIQ+D+++LR+E+  ++ G GGRL++GTIMGA P
Sbjct: 65  TNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVP 117


>ref|YP_001863148.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC76102.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 89/111 (80%)

Query: 1   LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60
           LP+V +IV+RLR KQ+ LL ALDE GSLH+AA+ M +TQP ATKAL E+E+  G TLF R
Sbjct: 2   LPNVDSIVARLRLKQLRLLIALDEHGSLHRAADQMALTQPGATKALREIEATFGATLFTR 61

Query: 61  STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGA 111
           S +GI+  ELGRCV+RYARLI  D+++LR+E++G+L G GGRL++G I GA
Sbjct: 62  SPQGIQPNELGRCVVRYARLIHMDVAHLREEMEGILQGSGGRLAVGAITGA 112