BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0099.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 397 e-109 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 299 2e-79 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 298 4e-79 ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax... 283 1e-74 ref|YP_001769970.1| polar amino acid ABC transporter inner membr... 279 2e-73 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/227 (87%), Positives = 209/227 (92%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M+YTFDFMSVF NW RLL GAWLTIQLSALSIVLGF VGTLCAIA KS+ L++ LV Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVFLV+FGLASIG +L+AETAAVIALTVNVGAYT EIMRAGINSIHPGQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAECLGMS+FHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QSETFRSFEVY VIAVAYL LSFLFR AFW + + AFVRKRKLGTNL Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/227 (63%), Positives = 180/227 (79%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M Y FDF ++ W G WLT+QLS ++ VLGFV+GTLCAI + ++ALV Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VE+IRNTPLLVQ+F++YFG+A++GL + A AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+S+ YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QS+TFRSFE Y+V+ V YLALSF+ R AFWL G FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 298 bits (763), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 146/227 (64%), Positives = 179/227 (78%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M Y FDF + W G WLT+QLS +S VLGF++GTLCAI ++ LV TY Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVF+VYFG+A++G+ ++A AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+S+ YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QS+TFRSFE Y+V+ V YLALSF+ R AFWL G FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68774.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 227 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/226 (61%), Positives = 171/226 (75%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M Y F+F V WPRLL G T +LSA IV GFV+GTL AI K +L +V Y Sbjct: 1 MTYVFEFSDVLAAWPRLLSGLKYTAELSAAGIVFGFVLGTLSAIVRHQKLPVLNGIVSVY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VE IRNTP LVQ FLV+FGL+++G+RL+AE A +ALT+N GAYT EIMRAG+++ H GQ Sbjct: 61 VEAIRNTPFLVQAFLVFFGLSTLGIRLSAEFCAALALTLNAGAYTCEIMRAGLDATHKGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE LGM +YWHV+LLPA+E+VYP+LTSQF+LLML++SITSQISAEELT AN+V Sbjct: 121 IEAAESLGMGWPAIYWHVMLLPAIEKVYPALTSQFVLLMLSTSITSQISAEELTGVANIV 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTN 226 QSETFRSFEVY+++ YLALSF+FR FW+VGK F R LG + Sbjct: 181 QSETFRSFEVYLLVGAIYLALSFVFRMIFWVVGKLCFTSTRVLGPS 226 >ref|YP_001769970.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA17536.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/227 (59%), Positives = 175/227 (77%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M DF +V WP L+GA LT++LS ++ +G +G + AI +S+ L+ L + Y Sbjct: 1 MSLDLDFGAVLERWPSFLDGALLTLELSGIATAVGGALGGITAIGRRSRHAALRRLCEVY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VE IRNTPLLVQ+FLVYFGLAS+G R +A T A +ALT+NVGAYT EI+RAG+++I GQ Sbjct: 61 VEAIRNTPLLVQIFLVYFGLASLGFRFSALTVAALALTINVGAYTTEIVRAGLDAIPRGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE L +S+ +Y HVVLLPA+ERVYPSLTSQF+LLMLASS+TSQISAEELTA AN + Sbjct: 121 IEAAEGLALSRAQIYRHVVLLPAIERVYPSLTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QS+T+R+FE Y+V+A+ Y+ALSF+ RA FW +G F R+R+LGT L Sbjct: 181 QSDTYRAFETYIVVALIYVALSFIMRAGFWGLGLVLFPRRRRLGTPL 227