BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0098.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777259.1| amino acid ABC transporter permease [Herbasp... 400 e-110 ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax... 278 3e-73 ref|YP_003693666.1| polar amino acid ABC transporter inner membr... 270 1e-70 ref|ZP_04681593.1| amino acid ABC transporter, permease protein,... 268 6e-70 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 266 1e-69 >ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65351.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/216 (91%), Positives = 206/216 (95%) Query: 1 VTSFTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQ 60 + +F+FLHVEYLLQAAVWT+VLSLVAF FGG AGFVIALWRVSPN LR IAS YIQ+VQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 61 GIPLLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIPLLVILFVAYFGLAIAGFKL+PLVAAGISFA+YCAAFLGEIWRGCIQAVPKTQWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 121 CLGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 CLGFNRFEQL KVILPQA KIA PPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 181 QPFTVFGCVALIYFCLCYPLSALSKHFERKLNVSNR 216 QPFTVFGCVALIYFCLC+PLSALSKHFERKLNVS+R Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68773.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 214 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 133/210 (63%), Positives = 170/210 (80%) Query: 7 LHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQGIPLLV 66 + ++YL AA+WT+ L+L+A G GF IAL+RVSPN LR ++ YIQ +QGIPLLV Sbjct: 5 IQIQYLGVAALWTVGLTLMALIGGSILGFCIALFRVSPNSVLRYLSVVYIQTIQGIPLLV 64 Query: 67 ILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASECLGFNR 126 +LF+AYFG +IAGF SP V ++F++Y AA+LGEIWRGCIQ VPK QWEAS LGFNR Sbjct: 65 LLFIAYFGFSIAGFNPSPFVTVVVAFSLYSAAYLGEIWRGCIQTVPKPQWEASGSLGFNR 124 Query: 127 FEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVF 186 ++QL+ VI+PQAF+IA PPTVGF+VQ+VKNTSLAS +GF++L+RAGQI+NN+TF+PF+VF Sbjct: 125 YQQLRLVIIPQAFRIATPPTVGFLVQLVKNTSLASTVGFIELARAGQILNNTTFKPFSVF 184 Query: 187 GCVALIYFCLCYPLSALSKHFERKLNVSNR 216 VAL YF LC+PLS LSK ER LNV++R Sbjct: 185 LLVALFYFGLCFPLSLLSKKLERSLNVAHR 214 >ref|YP_003693666.1| polar amino acid ABC transporter inner membrane subunit [Starkeya novella DSM 506] gb|ADH89047.1| polar amino acid ABC transporter, inner membrane subunit [Starkeya novella DSM 506] Length = 220 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 122/202 (60%), Positives = 165/202 (81%) Query: 8 HVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQGIPLLVI 67 H+ +L A+WTI LS++A GG AGF++AL RVSP++T+R +A+ Y+Q++QG PLLVI Sbjct: 9 HLLFLGHGALWTIGLSVIALVGGGLAGFLVALGRVSPSRTVRLLAATYVQLIQGTPLLVI 68 Query: 68 LFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRF 127 +F+++FGLA GF +SPL AAG S ++ AA+LGEIWRGCI+AVP+ QWEA+E L +R Sbjct: 69 MFLSFFGLAAIGFNISPLAAAGASMTIFVAAYLGEIWRGCIEAVPRPQWEAAEGLALSRS 128 Query: 128 EQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFG 187 +++ KVILPQA +IA PPTVGFMVQI+KNTSLASV+GFV+L+R+GQIINNS F+PF ++ Sbjct: 129 QRMVKVILPQAIRIATPPTVGFMVQIIKNTSLASVVGFVELTRSGQIINNSMFEPFLIYS 188 Query: 188 CVALIYFCLCYPLSALSKHFER 209 +A++YF LCYPLS LS+ ER Sbjct: 189 IIAVVYFSLCYPLSRLSRRLER 210 >ref|ZP_04681593.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] gb|EEQ92897.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 166/207 (80%) Query: 2 TSFTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQG 61 T+F H+ +LL+ A+WT++L+ +AF GG GF++AL R++P++ LR IA+ Y+Q++QG Sbjct: 3 TAFNHNHLIFLLEGALWTVILTGMAFIGGGIVGFIVALGRITPSRALRLIAATYVQLIQG 62 Query: 62 IPLLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASEC 121 PLLVI+F+ YFGL GF ++PL AAGIS +Y +A+LGEIWRGC+++VPK QWE +EC Sbjct: 63 TPLLVIMFIIYFGLPTLGFSITPLFAAGISLTIYVSAYLGEIWRGCLESVPKAQWEGAEC 122 Query: 122 LGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQ 181 L +R +++ KVILPQA +IA PPTVGF VQIVKNTSLASV+GFV+L+RAGQ+INNS F+ Sbjct: 123 LALSRTQRMFKVILPQAVRIATPPTVGFSVQIVKNTSLASVVGFVELTRAGQLINNSIFE 182 Query: 182 PFTVFGCVALIYFCLCYPLSALSKHFE 208 PF ++ VA +YFCLC+PLSA S+ E Sbjct: 183 PFLIYLIVAALYFCLCFPLSAFSQRLE 209 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/215 (60%), Positives = 163/215 (75%) Query: 1 VTSFTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQ 60 V SF +LL++ WT+VL+ +A GG AG IAL RVSP LR + YIQI+Q Sbjct: 3 VRSFGLNDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQIIQ 62 Query: 61 GIPLLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASE 120 G P+L+ILF++Y+GL++ GF+L LVAA IS ++Y + +LG+IWRGCI+AVPK QWEASE Sbjct: 63 GSPVLMILFLSYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEASE 122 Query: 121 CLGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 CLG R +Q + +ILPQA +IA+PPT GF VQ+VKNTS+ S+IGFV+LSRAGQ+INNSTF Sbjct: 123 CLGMTRVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNSTF 182 Query: 181 QPFTVFGCVALIYFCLCYPLSALSKHFERKLNVSN 215 QPF VF VA IYF +CYPLS LS ERKLNV + Sbjct: 183 QPFRVFLTVAAIYFVICYPLSRLSGWLERKLNVGS 217