BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0096.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777261.1| amino acid transport periplasmic protein [He... 447 e-124 ref|YP_522302.1| extracellular solute-binding protein [Rhodofera... 289 3e-76 gb|EGP48471.1| amino acid ABC transporter/signal transduction sy... 257 1e-66 ref|YP_982301.1| extracellular solute-binding protein [Polaromon... 256 2e-66 ref|YP_001526196.1| extracellular substrate-binding protein [Azo... 256 3e-66 >ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65353.1| ABC-type amino acid transport periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/268 (82%), Positives = 243/268 (90%) Query: 1 MKTLSNFTKKAAAVMLGLACFAQVVHADTLADIKARKKVLIAVDLGAPPFGMTNAKLEPQ 60 MK L +FT+KAAAV+LGLACFAQ HAD LADIKARKKVL+A+DLGAPPFGMTNAKLEPQ Sbjct: 1 MKKLLSFTRKAAAVVLGLACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQ 60 Query: 61 GSDVETARALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERAKVISFTHPY 120 GSDVETAR LAKDLGVELEIVQVTGPNR+PFLMTGKADMVI++FSITPER KV++FT PY Sbjct: 61 GSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 120 Query: 121 GASQFVVAAPKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFDDDATVTAA 180 GASQFVVAAPKG IKSL DL GKR+AVVRGNMQDSLLTP+APKG IVRFDDDATVTAA Sbjct: 121 GASQFVVAAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAA 180 Query: 181 VVSGQVDGLCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQKWLNAWVDT 240 ++SGQVD LCTPN+LA+AIA+QNPSK LETKFAIKDIPYAIG+R+ EP L+KWLN W+ Sbjct: 181 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWISA 240 Query: 241 NTKNGRLGQIYQQWVGTPMPDLAQFATK 268 N KNG+L IYQQWVG+PMPDLAQFA K Sbjct: 241 NLKNGKLPGIYQQWVGSPMPDLAQFAAK 268 >ref|YP_522302.1| extracellular solute-binding protein [Rhodoferax ferrireducens T118] gb|ABD68771.1| extracellular solute-binding protein, family 3 [Rhodoferax ferrireducens T118] Length = 265 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 140/260 (53%), Positives = 181/260 (69%) Query: 9 KKAAAVMLGLACFAQVVHADTLADIKARKKVLIAVDLGAPPFGMTNAKLEPQGSDVETAR 68 K +A+ + L V ADTLA+IK R KVL+ +DL PFG +A ++P GSDV A+ Sbjct: 6 KIISALAIALVAICTSVQADTLANIKQRNKVLVGIDLTFAPFGSMDAAMKPMGSDVSAAK 65 Query: 69 ALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERAKVISFTHPYGASQFVVA 128 LAKDLGVELEIVQ+TGPNRVP+L+TGK DMVI++FSITPER KVI F+ PY S+ V+ Sbjct: 66 MLAKDLGVELEIVQLTGPNRVPYLLTGKVDMVISSFSITPERKKVIDFSVPYSVSESVIL 125 Query: 129 APKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFDDDATVTAAVVSGQVDG 188 APK I L DL GKRI +VRGN+Q++LL P+AP+G VRFDDDA+ A++SGQVD Sbjct: 126 APKSVQITKLQDLAGKRIGLVRGNLQENLLKPIAPEGMIPVRFDDDASNVVALLSGQVDA 185 Query: 189 LCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQKWLNAWVDTNTKNGRLG 248 L L IA+Q+P K +E+K +I +P+ IGIR+ + L W N WV N KNGRL Sbjct: 186 LGGSKELLPNIAKQSPEKQVESKLSIGILPHGIGIRKEDTSLLNWTNQWVMANLKNGRLS 245 Query: 249 QIYQQWVGTPMPDLAQFATK 268 Y++ VG P+PD++QF K Sbjct: 246 NSYKEAVGFPLPDMSQFMPK 265 >gb|EGP48471.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Achromobacter xylosoxidans AXX-A] Length = 272 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/246 (53%), Positives = 164/246 (66%) Query: 15 MLGLACFAQVVHADTLADIKARKKVLIAVDLGAPPFGMTNAKLEPQGSDVETARALAKDL 74 ++G + HAD L DI KK+ +A+DLG PP+GM +A L P GSDVETAR LAK L Sbjct: 19 LIGGLALSGAAHADQLDDIMKAKKLRVAIDLGVPPYGMKDAALNPTGSDVETARLLAKGL 78 Query: 75 GVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERAKVISFTHPYGASQFVVAAPKGTA 134 GVELEIV TG NRVPFL TGKAD+VI++ S+TPER KVI F+ PY A VV APKG Sbjct: 79 GVELEIVPTTGANRVPFLQTGKADIVISSMSVTPERQKVIDFSTPYAAILAVVGAPKGMK 138 Query: 135 IKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFDDDATVTAAVVSGQVDGLCTPNA 194 + S ADL+ K++ RG D+ LT +APK A I+RFDDDAT AVVSGQ D T A Sbjct: 139 LISAADLSNKKVIATRGTTNDTELTKIAPKDAQIIRFDDDATSITAVVSGQADIFATAPA 198 Query: 195 LAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQKWLNAWVDTNTKNGRLGQIYQQW 254 L I + PSK +E+KF ++ AIG+R+NEP L+ L+ WV N KNG L IY+Q+ Sbjct: 199 LLRTINEKAPSKQMESKFVMRLNMLAIGLRKNEPALKDKLDGWVRANLKNGELNTIYKQF 258 Query: 255 VGTPMP 260 G +P Sbjct: 259 HGVDLP 264 >ref|YP_982301.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM37380.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 255 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/231 (53%), Positives = 163/231 (70%), Gaps = 1/231 (0%) Query: 26 HADTLADIKARKKVLIAVDLGAPPFGMTNAKLEPQGSDVETARALAKDLGVELEIVQVTG 85 HAD L DI+ KK+ IAVD G+PP+G + L+P GSDVETA+ LA+DLGV LE+VQ T Sbjct: 25 HADLLKDIREAKKIRIAVDTGSPPYGFVDDALKPVGSDVETAQLLAQDLGVALEMVQTTS 84 Query: 86 PNRVPFLMTGKADMVIATFSITPERAKVISFTHPYGASQFVVAAPKGTAIKSLADLNGKR 145 PNR+PFL TGKAD+V+A+ S+TPER KV+ F+ PY VVA PK +IK DL GKR Sbjct: 85 PNRIPFLQTGKADIVVASLSVTPEREKVVDFSTPYAQILAVVAGPKAVSIKGFDDLQGKR 144 Query: 146 IAVVRGNMQDSLLTPLAPKGATIVRFDDDATVTAAVVSGQVDGLCTPNALAAAIARQNPS 205 +A RG+ D + T L KGA +VR+DDDAT+ A VSGQ D + T A+ A+ ++P Sbjct: 145 VATTRGSNNDRVAT-LGAKGAQMVRYDDDATLVTAAVSGQADIIATSPAIVNAVLGKSPQ 203 Query: 206 KGLETKFAIKDIPYAIGIRQNEPELQKWLNAWVDTNTKNGRLGQIYQQWVG 256 K L TKF ++ +P IG+R+NEPEL+ WLN WV NT+NG+L IY+++ G Sbjct: 204 KDLVTKFVMQTVPLGIGMRKNEPELKAWLNDWVTKNTQNGKLTAIYKKYHG 254 >ref|YP_001526196.1| extracellular substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF89278.1| extracellular solute-binding protein [Azorhizobium caulinodans ORS 571] Length = 267 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/244 (51%), Positives = 172/244 (70%), Gaps = 1/244 (0%) Query: 18 LACFAQVVHADTLADIKARKKVLIAVDLGAPPFGMTNAKLEPQGSDVETARALAKDLGVE 77 + FA ADTL +IK R K+LIAVDLG+PPFGM +A ++P GSDVE+A+ +A DLG Sbjct: 21 MGSFALPARADTLDEIKKRGKILIAVDLGSPPFGMNDANMQPTGSDVESAKLIAADLGFP 80 Query: 78 LEIVQVTGPNRVPFLMTGKADMVIATFSITPERAKVISFTHPYGASQFVVAAPKGTAIKS 137 LEIVQVT PNR+PFL+TGKAD+V+A+FS+T ER KVI F+ PYG Q VVAAPK A+K Sbjct: 81 LEIVQVTSPNRIPFLLTGKADLVMASFSVTDERKKVIDFSDPYGVIQIVVAAPKSVAVKD 140 Query: 138 LADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFDDDATVTAAVVSGQVDGLCTPNALAA 197 L DL GKR+ RG+ D T A +GA +VR+DDDAT+ A+VSGQV+ + + + A Sbjct: 141 LKDLVGKRLGTTRGSSNDKEATTQA-QGAEMVRYDDDATLITALVSGQVNIMASSPQVMA 199 Query: 198 AIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQKWLNAWVDTNTKNGRLGQIYQQWVGT 257 A+ + P+ LE K +K PYA G+R+ + L++ +N + TN KNG+L +IY ++ GT Sbjct: 200 AVNARRPNDPLEIKLVLKTNPYAAGLRKGDDALREAVNKVIATNLKNGKLNEIYTRYNGT 259 Query: 258 PMPD 261 +P+ Sbjct: 260 SLPE 263