BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0069.p         (283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003753389.1| glutamyl-tRNA amidotransferase/amidase (gatA...   338   6e-91
emb|CCA80112.1| putative Glutamyl-tRNA amidotransferase/amidase ...   338   7e-91
ref|NP_518710.1| amidase [Ralstonia solanacearum GMI1000] >gi|17...   330   2e-88
emb|CBJ39061.1| putative Glutamyl-tRNA amidotransferase/amidase ...   329   2e-88
ref|YP_584075.1| amidase [Cupriavidus metallidurans CH34] >gi|93...   318   6e-85

>ref|YP_003753389.1| glutamyl-tRNA amidotransferase/amidase (gatA) [Ralstonia
           solanacearum PSI07]
 emb|CBJ52129.1| putative Glutamyl-tRNA amidotransferase/amidase (gatA) [Ralstonia
           solanacearum PSI07]
          Length = 448

 Score =  338 bits (867), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 183/260 (70%), Positives = 199/260 (76%), Gaps = 6/260 (2%)

Query: 1   VSIKDLFDVQGEVTAAGSKALADAPAAQADALAVTRLRHAGAVLLGRTNMSEFAFSGLGL 60
           VSIKDLFDV G+VTAAGS+ALA  PAA +DA AV RLR AGAVLLGRTNMSEFAFSGLGL
Sbjct: 78  VSIKDLFDVAGQVTAAGSRALAHQPAATSDATAVARLRAAGAVLLGRTNMSEFAFSGLGL 137

Query: 61  NPHYGTPRNPLDGTRVTGGSTSGGAVSVAGDMAVMALGTDTGGSIRIPSAFCGLTGFKPT 120
           NPHYGTPR P DGTR  GGSTSGGAV+VAG MAV ALGTDTGGSIRIPSAFC LTGFKPT
Sbjct: 138 NPHYGTPRTPADGTRAAGGSTSGGAVTVAGGMAVAALGTDTGGSIRIPSAFCALTGFKPT 197

Query: 121 ARRVSLDGAVPLSTTLDSAGPLARSVDCCAIADAILSGETLATDAVPLAGLRFGVTEDFV 180
           ARRV + G VPLST+LDS GPLA SVDCCAI DA+LSG+TL TDAVPLAGLR G+T D+V
Sbjct: 198 ARRVPMAGGVPLSTSLDSGGPLANSVDCCAIVDAVLSGQTLDTDAVPLAGLRLGLTRDYV 257

Query: 181 NDGMDDAVRAAFDAALARLQKAGALIQRFSFPELKELPSINAGGVSSRLRGASAWTGRCR 240
              +DD V  AF+ A+ARL+ AGA I RF FPEL  LP IN GG    L  A AW     
Sbjct: 258 GADLDDTVTTAFERAVARLEHAGARIVRFDFPELLRLPEINGGG---GLPAAEAWAWH-- 312

Query: 241 CRPHWIRPGRWRAASIAARL 260
            RPH  R        +AAR+
Sbjct: 313 -RPHLARAEAQYDHRVAARI 331


>emb|CCA80112.1| putative Glutamyl-tRNA amidotransferase/amidase (gatA) [blood
           disease bacterium R229]
          Length = 448

 Score =  338 bits (866), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 183/260 (70%), Positives = 199/260 (76%), Gaps = 6/260 (2%)

Query: 1   VSIKDLFDVQGEVTAAGSKALADAPAAQADALAVTRLRHAGAVLLGRTNMSEFAFSGLGL 60
           VSIKDLFDV G+VTAAGS+ALA  PAA +DA AV RLR AGAVLLGRTNMSEFAFSGLGL
Sbjct: 78  VSIKDLFDVAGQVTAAGSRALAHQPAATSDATAVARLRAAGAVLLGRTNMSEFAFSGLGL 137

Query: 61  NPHYGTPRNPLDGTRVTGGSTSGGAVSVAGDMAVMALGTDTGGSIRIPSAFCGLTGFKPT 120
           NPHYGTPR P DGTR  GGSTSGGAV+VAG MAV ALGTDTGGSIRIPSAFC LTGFKPT
Sbjct: 138 NPHYGTPRTPADGTRAAGGSTSGGAVTVAGGMAVAALGTDTGGSIRIPSAFCALTGFKPT 197

Query: 121 ARRVSLDGAVPLSTTLDSAGPLARSVDCCAIADAILSGETLATDAVPLAGLRFGVTEDFV 180
           ARRV + G VPLST+LDS GPLA SVDCCAI DA+LSG+TL TDAVPLAGLR G+T D+V
Sbjct: 198 ARRVPMAGGVPLSTSLDSGGPLANSVDCCAIVDAVLSGQTLDTDAVPLAGLRLGLTRDYV 257

Query: 181 NDGMDDAVRAAFDAALARLQKAGALIQRFSFPELKELPSINAGGVSSRLRGASAWTGRCR 240
              +DD V  AF+ A+ARL+ AGA I RF FPEL  LP IN GG    L  A AW     
Sbjct: 258 GADLDDTVTTAFERAVARLEHAGARIVRFDFPELLRLPEINGGG---GLPAAEAWAWH-- 312

Query: 241 CRPHWIRPGRWRAASIAARL 260
            RPH  R        +AAR+
Sbjct: 313 -RPHLARAEAQYDHRVAARI 331


>ref|NP_518710.1| amidase [Ralstonia solanacearum GMI1000]
 emb|CAD14119.1| probable amidase protein [Ralstonia solanacearum GMI1000]
          Length = 448

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/260 (68%), Positives = 198/260 (76%), Gaps = 6/260 (2%)

Query: 1   VSIKDLFDVQGEVTAAGSKALADAPAAQADALAVTRLRHAGAVLLGRTNMSEFAFSGLGL 60
           VSIKDLFDV G+VTAAGS+ALA   AA +DA AV RLR AGAVLLGRTNMSEFAFSGLGL
Sbjct: 78  VSIKDLFDVAGQVTAAGSRALAHQSAATSDATAVARLRAAGAVLLGRTNMSEFAFSGLGL 137

Query: 61  NPHYGTPRNPLDGTRVTGGSTSGGAVSVAGDMAVMALGTDTGGSIRIPSAFCGLTGFKPT 120
           NPHYGTPR P DGTR  GGSTSGGAV+VAG MAV ALGTDTGGSIRIP+AFC LTGFKPT
Sbjct: 138 NPHYGTPRTPADGTRAAGGSTSGGAVTVAGGMAVAALGTDTGGSIRIPAAFCALTGFKPT 197

Query: 121 ARRVSLDGAVPLSTTLDSAGPLARSVDCCAIADAILSGETLATDAVPLAGLRFGVTEDFV 180
           ARRV + G VPLST+LDS GPLA SVDCCAI DA+LSG+ L TDAVPLAGLR G+T D+V
Sbjct: 198 ARRVPMAGGVPLSTSLDSGGPLANSVDCCAIVDAVLSGQALDTDAVPLAGLRLGLTRDYV 257

Query: 181 NDGMDDAVRAAFDAALARLQKAGALIQRFSFPELKELPSINAGGVSSRLRGASAWTGRCR 240
              +DD V  AF  A+A+L++AGA I RF FPEL +LP IN GG    L  A AW     
Sbjct: 258 AADLDDTVATAFARAVAQLERAGAHIVRFEFPELLQLPEINGGG---GLPAAEAWAWH-- 312

Query: 241 CRPHWIRPGRWRAASIAARL 260
            RPH  R        +AAR+
Sbjct: 313 -RPHLARAEAQYDRRVAARI 331


>emb|CBJ39061.1| putative Glutamyl-tRNA amidotransferase/amidase (gatA) [Ralstonia
           solanacearum CMR15]
          Length = 448

 Score =  329 bits (844), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/247 (71%), Positives = 193/247 (78%), Gaps = 6/247 (2%)

Query: 1   VSIKDLFDVQGEVTAAGSKALADAPAAQADALAVTRLRHAGAVLLGRTNMSEFAFSGLGL 60
           VSIKDLFDV G+VTAAGS+ALA   AA +DA AV RLR AGAVLLGRTNMSEFAFSGLGL
Sbjct: 78  VSIKDLFDVAGQVTAAGSRALAHQRAATSDATAVARLRAAGAVLLGRTNMSEFAFSGLGL 137

Query: 61  NPHYGTPRNPLDGTRVTGGSTSGGAVSVAGDMAVMALGTDTGGSIRIPSAFCGLTGFKPT 120
           NPHYGTPR P DGTR  GGSTSGGAV+VAG MAV ALGTDTGGSIRIP+AFC LTGFKPT
Sbjct: 138 NPHYGTPRTPADGTRAAGGSTSGGAVTVAGGMAVAALGTDTGGSIRIPAAFCALTGFKPT 197

Query: 121 ARRVSLDGAVPLSTTLDSAGPLARSVDCCAIADAILSGETLATDAVPLAGLRFGVTEDFV 180
           ARRV + G VPLST+LDS GPLA SVDCCAI DA+LSG+ L TDAVPLAGLR G+T D+V
Sbjct: 198 ARRVPMAGGVPLSTSLDSGGPLANSVDCCAIVDAVLSGQALDTDAVPLAGLRLGLTRDYV 257

Query: 181 NDGMDDAVRAAFDAALARLQKAGALIQRFSFPELKELPSINAGGVSSRLRGASAWTGRCR 240
              +DD V  AF  A+ARL++AGA I RF FPEL +LP IN GG    L  A AW     
Sbjct: 258 AADLDDTVATAFARAVARLERAGAHIVRFEFPELLQLPEINGGG---GLPAAEAWAWH-- 312

Query: 241 CRPHWIR 247
            RPH  R
Sbjct: 313 -RPHLAR 318


>ref|YP_584075.1| amidase [Cupriavidus metallidurans CH34]
 gb|ABF08806.1| amidase [Cupriavidus metallidurans CH34]
          Length = 440

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 184/235 (78%), Gaps = 3/235 (1%)

Query: 1   VSIKDLFDVQGEVTAAGSKALADAPAAQADALAVTRLRHAGAVLLGRTNMSEFAFSGLGL 60
           +SIKDLFDV+G+VT AGSKAL     AQAD+ AV RLR AGAVL+GRTNMSEFAFSGLGL
Sbjct: 75  ISIKDLFDVRGQVTRAGSKALDGGAPAQADSPAVARLRAAGAVLIGRTNMSEFAFSGLGL 134

Query: 61  NPHYGTPRNPLDGTRVTGGSTSGGAVSVAGDMAVMALGTDTGGSIRIPSAFCGLTGFKPT 120
           NPHYGTPR P D  RV GGSTSGGAVSVA DMAV ALGTDTGGSIRIPSAFCGLTGFKPT
Sbjct: 135 NPHYGTPRTPFDPERVAGGSTSGGAVSVAEDMAVAALGTDTGGSIRIPSAFCGLTGFKPT 194

Query: 121 ARRVSLDGAVPLSTTLDSAGPLARSVDCCAIADAILSGETLATDAVPLAGLRFGVTEDFV 180
           ARRV LDGAVPLST+LDSAGPLARSV CC   DA+LSGETL T A  L GLRF VT DFV
Sbjct: 195 ARRVPLDGAVPLSTSLDSAGPLARSVACCVAMDAVLSGETLDTRAADLRGLRFYVTRDFV 254

Query: 181 NDGMDDAVRAAFDAALARLQKAGALIQRFSFPELKELPSINAGGVSSRLRGASAW 235
            DG+D  V   F+AALARL   GA I  F FPEL+ LP IN GG    L  A +W
Sbjct: 255 CDGLDPEVAQTFEAALARLSAQGATIVPFDFPELRRLPEINGGG---GLTAAESW 306