BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0035.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001101127.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol k...   132   2e-29
ref|YP_582445.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kina...   129   2e-28
ref|ZP_08273344.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol ki...   127   4e-28
ref|YP_724892.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kina...   127   5e-28
ref|YP_004684237.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol k...   126   9e-28

>ref|YP_001101127.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Herminiimonas
          arsenicoxydans]
 sp|A4G919.1|ISPE_HERAR RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
          Short=CMK; AltName:
          Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
          kinase
 emb|CAL63006.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)
          (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
          kinase) [Herminiimonas arsenicoxydans]
          Length = 286

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 73/99 (73%)

Query: 1  MPASLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDI 60
          M  +L +CPAPAKLNLFLHVTGRRADGYHLLQ+VFQLIDR D L F+VRDDG+IHR  ++
Sbjct: 1  MVRTLNNCPAPAKLNLFLHVTGRRADGYHLLQSVFQLIDRGDVLHFSVRDDGLIHRSTEL 60

Query: 61 PGVPADTDLVVRAARLLQAAGGGXGGGGGGGAANRSWAP 99
           GVPAD+DLVVRAARLLQ      G   G   A     P
Sbjct: 61 AGVPADSDLVVRAARLLQTEAKKQGKTPGADIAIEKKLP 99


>ref|YP_582445.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Cupriavidus
          metallidurans CH34]
 sp|Q1LRQ0.1|ISPE_RALME RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
          Short=CMK; AltName:
          Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
          kinase
 gb|ABF07176.1| 4-diphosphocytidyl-2-C-methylerythritol kinase [Cupriavidus
          metallidurans CH34]
          Length = 292

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 68/85 (80%)

Query: 2  PASLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDIP 61
          P  L +CPAPAKLNLFLHVTGRR DGYH LQTVFQLID SD L F  RDDGVI RV DIP
Sbjct: 9  PPELRNCPAPAKLNLFLHVTGRRPDGYHTLQTVFQLIDWSDTLHFHRRDDGVITRVTDIP 68

Query: 62 GVPADTDLVVRAARLLQAAGGGXGG 86
          GVPADTDLVVRAAR +QAA G   G
Sbjct: 69 GVPADTDLVVRAARAMQAASGTRFG 93


>ref|ZP_08273344.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
          [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33176.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
          [Oxalobacteraceae bacterium IMCC9480]
          Length = 285

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 68/84 (80%)

Query: 4  SLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDIPGV 63
          +L DCPAPAKLNLFLHVTGRRADGYHLLQ+ FQLIDRSD L F VRDDGVI R  ++ G+
Sbjct: 7  TLRDCPAPAKLNLFLHVTGRRADGYHLLQSAFQLIDRSDLLHFDVRDDGVIRRTTEVAGI 66

Query: 64 PADTDLVVRAARLLQAAGGGXGGG 87
          P D+DL+VRAARLLQ A G   G 
Sbjct: 67 PHDSDLIVRAARLLQQATGSRYGA 90


>ref|YP_724892.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Ralstonia
          eutropha H16]
 sp|Q0KEP7.1|ISPE_RALEH RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
          Short=CMK; AltName:
          Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
          kinase
 emb|CAJ91524.1| 4-Diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate kinase
          [Ralstonia eutropha H16]
          Length = 292

 Score =  127 bits (320), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 68/86 (79%)

Query: 2  PASLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDIP 61
          P  L DCPAPAKLNLFLHVTGRRADGYH LQTVFQL+D  D L F  RDDGV+ RV D+P
Sbjct: 9  PPELRDCPAPAKLNLFLHVTGRRADGYHTLQTVFQLVDWCDTLHFRRRDDGVVARVTDVP 68

Query: 62 GVPADTDLVVRAARLLQAAGGGXGGG 87
          GVPA+TDLVVRAAR LQAA G   G 
Sbjct: 69 GVPAETDLVVRAARALQAATGATFGA 94


>ref|YP_004684237.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE
          [Cupriavidus necator N-1]
 gb|AEI75756.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE
          [Cupriavidus necator N-1]
          Length = 292

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 67/86 (77%)

Query: 2  PASLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDIP 61
          P  L DCPAPAKLNLFLHVTGRRADGYH LQTVFQL+D  D L F  RDDG+I RV D+P
Sbjct: 9  PPELRDCPAPAKLNLFLHVTGRRADGYHTLQTVFQLVDWCDTLHFRRRDDGLIARVTDVP 68

Query: 62 GVPADTDLVVRAARLLQAAGGGXGGG 87
          GVPADTDL VRAAR LQAA G   G 
Sbjct: 69 GVPADTDLTVRAARALQAASGTAFGA 94