BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0029.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354990.1| glutamate synthase (NADPH) small chain [Jant... 895 0.0 ref|YP_001101311.1| glutamate synthase, small subunit, nucleotid... 889 0.0 ref|YP_003777303.1| glutamate synthase small subunit oxidoreduct... 873 0.0 ref|YP_004751163.1| glutamate synthase, small subunit, nucleotid... 850 0.0 ref|ZP_01739294.1| glutamate synthase, small subunit [Marinobact... 817 0.0 >ref|YP_001354990.1| glutamate synthase (NADPH) small chain [Janthinobacterium sp. Marseille] gb|ABR89126.1| glutamate synthase (NADPH) small chain [Janthinobacterium sp. Marseille] Length = 487 Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/473 (88%), Positives = 447/473 (94%) Query: 1 MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60 MGK+TGFME++RL+EASE PQ R HYKEF +HL DA++KVQ ARCMDCGIPFCNNGCPV Sbjct: 1 MGKITGFMEFQRLREASEEPQKRTAHYKEFTMHLSDADSKVQAARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120 NNIIPDWNDLVY G YK+ALDTLHSTNNFPEFTGRICPAPCESACTLGIN D VGIKSIE Sbjct: 61 NNIIPDWNDLVYSGAYKQALDTLHSTNNFPEFTGRICPAPCESACTLGINEDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGW+NGWV PQ +VKTGKK+AVVGSGPAGMAAAQQLAR GHD+TVFEKNDRVGG Sbjct: 121 HFIIDKGWDNGWVVPQVPSVKTGKKIAVVGSGPAGMAAAQQLARVGHDITVFEKNDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240 LLRYGIPDFKMEK+HIDLRV+QM+AEGV FRT LVGKDFPANI NW+KET+SP+ + KD Sbjct: 181 LLRYGIPDFKMEKNHIDLRVKQMEAEGVTFRTGVLVGKDFPANIINWAKETISPEQINKD 240 Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300 FDAV+IAGGAE PRDLPVPGRELKGVHFAMEFLPLQNKVNAGDK+K Q+MAT KHVVVIG Sbjct: 241 FDAVIIAGGAEQPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKVKDQLMATGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360 GGDTGSDCVGTSNRHGAASVAQFEL+PQPPE ENKP+VWPYWPTKLRTSSSHEEGC+RDW Sbjct: 301 GGDTGSDCVGTSNRHGAASVAQFELLPQPPEEENKPLVWPYWPTKLRTSSSHEEGCERDW 360 Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420 AVATKRLEGKNGKVEKLIAARVEWKDG+MQEVPNSEFEMKADLVLLAMGFVSPVQQVL++ Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGRMQEVPNSEFEMKADLVLLAMGFVSPVQQVLDA 420 Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR 473 FGVDKD RGNAKATTDGEGCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQCAR Sbjct: 421 FGVDKDARGNAKATTDGEGCYRTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR 473 >ref|YP_001101311.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Herminiimonas arsenicoxydans] emb|CAL63190.1| Glutamate synthase [NADPH] small chain (NADPH-GOGAT) [Herminiimonas arsenicoxydans] Length = 487 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/473 (86%), Positives = 446/473 (94%) Query: 1 MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60 MGK+TGFME++RL+EASE P+ R KHYKEF +HL DAEAKVQ RCMDCGIPFCNNGCPV Sbjct: 1 MGKITGFMEFQRLQEASEEPKKRTKHYKEFTVHLSDAEAKVQATRCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120 NNIIPDWNDLVY G YK+ALDTLHSTNNFPEFTGRICPAPCESACTLGINSD VGIKSIE Sbjct: 61 NNIIPDWNDLVYSGAYKQALDTLHSTNNFPEFTGRICPAPCESACTLGINSDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWE+GWV PQP ++KTGKKVA+VGSGPAGMAAAQQLAR GHDVT+FEKNDR+GG Sbjct: 121 HFIIDKGWESGWVVPQPPSIKTGKKVAIVGSGPAGMAAAQQLARVGHDVTLFEKNDRIGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240 LLRYGIPDFKMEKSHIDLRV+QM+AEGV FRT LVGKDFPANI NW+KET+SP+ L KD Sbjct: 181 LLRYGIPDFKMEKSHIDLRVKQMEAEGVTFRTGVLVGKDFPANIINWAKETISPEQLDKD 240 Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300 FDAV++ GGAE PRDLPVPGREL+GVHFAM+FLPLQNKVNAGDK+K QI+AT KHV+VIG Sbjct: 241 FDAVILTGGAEQPRDLPVPGRELRGVHFAMDFLPLQNKVNAGDKVKDQILATGKHVIVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360 GGDTGSDCVGTSNRHGAAS+ QFEL+PQPPETENKPMVWPYWPTKLRTSSSHEEGC+RDW Sbjct: 301 GGDTGSDCVGTSNRHGAASIVQFELLPQPPETENKPMVWPYWPTKLRTSSSHEEGCERDW 360 Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420 AVATKRLEGKNGKVEKLIAARVEWKDG+MQEVP+SEFEMKADLVLLAMGFVSPV QVL++ Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGRMQEVPDSEFEMKADLVLLAMGFVSPVAQVLDA 420 Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR 473 F +DKD RGNAKATTDG+GCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQCAR Sbjct: 421 FSIDKDARGNAKATTDGDGCYRTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR 473 >ref|YP_003777303.1| glutamate synthase small subunit oxidoreductase [Herbaspirillum seropedicae SmR1] emb|CAM32562.1| Glutamate synthase (small subunit) oxidoreductase protein [Herbaspirillum seropedicae] gb|ADJ65395.1| glutamate synthase (small subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/474 (89%), Positives = 451/474 (95%) Query: 1 MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60 MGK TGFMEY+RLKEASEAP +R KHYKEFVLHL DA+AK+QGARCMDCGIPFCNNGCPV Sbjct: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120 NNIIPDWNDLVYRG+YKEALDTLH TNNFPEFTGRICPAPCE+ACTLGIN+DAVGIKSIE Sbjct: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWENGWV PQPAA+KTGKKVAVVGSGPAG+AAAQQLARAGHDVTVFEKNDRVGG Sbjct: 121 HFIIDKGWENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240 LLRYGIPDFKMEKSHIDLRVEQM+AEGV FRT VGKDFP + NWSKETV+P++LKK+ Sbjct: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKE 240 Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300 FDAVVIAGGAE PRDLPVPGRELKGVHFAM+FLPLQNKVNAGDKLK QIMAT K+VVVIG Sbjct: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360 GGDTGSDCVGTSNRHGAASV QFELMPQPPE+ENKP+VWPYWP KLRTSSSHEEGC RD+ Sbjct: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDF 360 Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420 AV TKRLEGK GKVEKLIAARVE+KDGKM EVP+SEFE+KADLVLLAMGFVSPVQQVL++ Sbjct: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARS 474 FGV+KD RGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR+ Sbjct: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARA 474 >ref|YP_004751163.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Collimonas fungivorans Ter331] gb|AEK60340.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Collimonas fungivorans Ter331] Length = 487 Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/474 (86%), Positives = 438/474 (92%) Query: 1 MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60 MGKVTGFMEY+R+ E EAP +R KHYKEF+L L + EAK QGARCMDCGIPFCNNGCPV Sbjct: 1 MGKVTGFMEYQRVGETYEAPVARKKHYKEFILSLSNDEAKTQGARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120 NNIIPDWNDLVYRG Y EAL+TLHSTNNFPEFTGRICPAPCESACTLGINSD VGIKSIE Sbjct: 61 NNIIPDWNDLVYRGAYHEALETLHSTNNFPEFTGRICPAPCESACTLGINSDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180 HFI+DKGWENGW+ PQP VKTGKKVAVVGSGPAG+AAAQQLAR GH+VTVFEK+DRVGG Sbjct: 121 HFIVDKGWENGWIVPQPPLVKTGKKVAVVGSGPAGLAAAQQLARIGHEVTVFEKSDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240 LLRYGIPDFKMEKSHID RVEQM+AEGV FRT LVGKDFPAN+ NW+K+TVSP++LK + Sbjct: 181 LLRYGIPDFKMEKSHIDRRVEQMEAEGVTFRTGVLVGKDFPANVNNWAKKTVSPEELKAE 240 Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300 FDAVVIAGGAE PRDLPVPGRELKGVHFAM+FLP QNKVNAGDK+K QI+A KHVVVIG Sbjct: 241 FDAVVIAGGAEQPRDLPVPGRELKGVHFAMDFLPQQNKVNAGDKVKEQILAGGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360 GGDTGSDCVGTSNR GA S+ QFELMPQPPE ENKP+VWPYWPTKLRTSSSHEEGCDRDW Sbjct: 301 GGDTGSDCVGTSNRQGAVSIQQFELMPQPPELENKPLVWPYWPTKLRTSSSHEEGCDRDW 360 Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVP+SEFEMKADLV LAMGFVSPV QVLE+ Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPDSEFEMKADLVFLAMGFVSPVAQVLEA 420 Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARS 474 FGVDKD RGNAKATTDG+ CYKTS DKVFAAGDMRRGQSLVVWAIREGRQCAR+ Sbjct: 421 FGVDKDARGNAKATTDGDACYKTSADKVFAAGDMRRGQSLVVWAIREGRQCARA 474 >ref|ZP_01739294.1| glutamate synthase, small subunit [Marinobacter sp. ELB17] gb|EAZ97791.1| glutamate synthase, small subunit [Marinobacter sp. ELB17] Length = 487 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/474 (82%), Positives = 428/474 (90%) Query: 1 MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60 MGK+TGFME++R KE+ SR+K+YKEF+L L D +AK +GARCMDCG PFC GCPV Sbjct: 1 MGKITGFMEFQRQKESYLPAASRVKNYKEFILPLKDVQAKTEGARCMDCGTPFCMTGCPV 60 Query: 61 NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120 NNIIPDWN LVY G+Y+EAL+TLHSTNNFPEFTGRICPAPCESAC L IN+DAVGIKSIE Sbjct: 61 NNIIPDWNQLVYSGNYREALETLHSTNNFPEFTGRICPAPCESACVLAINNDAVGIKSIE 120 Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWENGWVTPQPAA KTGKK+AVVGSGPAG+AAAQQLAR GHDVTVFEKNDR+GG Sbjct: 121 HFIIDKGWENGWVTPQPAAFKTGKKIAVVGSGPAGLAAAQQLARVGHDVTVFEKNDRIGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240 LLRYGIP FKMEKSHID R+EQMQAEGV FRTS L+G+DFP+NI NW+KET+SP L + Sbjct: 181 LLRYGIPGFKMEKSHIDRRIEQMQAEGVQFRTSVLIGEDFPSNIINWTKETISPKQLNQK 240 Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300 FDA+++AGGAELPRDLPVPGRELKGVHFAMEFLP QN+V+AGDKL QIMA+ KHVVVIG Sbjct: 241 FDAIILAGGAELPRDLPVPGRELKGVHFAMEFLPQQNQVDAGDKLNDQIMASGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360 GGDTGSDCVGT NRH AAS+AQFELMPQPPE E+KP+VWPYWP KLRTSSS EEGCDRDW Sbjct: 301 GGDTGSDCVGTCNRHSAASLAQFELMPQPPEQEDKPLVWPYWPIKLRTSSSQEEGCDRDW 360 Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420 AVATKR EGK GKVEKLIA RVEW DGKMQEVPNSEFEMKADLVLLAMGFVSPV QVLE+ Sbjct: 361 AVATKRFEGKGGKVEKLIAVRVEWIDGKMQEVPNSEFEMKADLVLLAMGFVSPVTQVLEA 420 Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARS 474 F V+KD RGN KATTDG+GCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQ AR+ Sbjct: 421 FAVEKDTRGNVKATTDGDGCYQTSVDKVFAAGDMRRGQSLVVWAIREGRQAARA 474