BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0024.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354284.1| LysR family transcriptional regulator [Janth... 486 e-135 ref|YP_001100752.1| LysR family transcriptional regulator [Hermi... 475 e-132 ref|YP_003777308.1| LysR family transcription regulator protein ... 441 e-121 ref|ZP_04589201.1| regulatory protein, LysR substrate-binding pr... 356 3e-96 ref|YP_261095.1| transcriptional activator protein NhaR [Pseudom... 356 3e-96 >ref|YP_001354284.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90731.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 299 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/298 (77%), Positives = 263/298 (88%), Gaps = 2/298 (0%) Query: 1 MAALNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQITLFEETLGYRLFNRVGRKLEL 60 M+ +NYKHLHYFW VAK+GGI RA ERLHLT QTISGQI+ FE+ LGY+LFNRVGR+LEL Sbjct: 1 MSGINYKHLHYFWVVAKSGGIGRASERLHLTPQTISGQISQFEDVLGYKLFNRVGRRLEL 60 Query: 61 NDAGRTVFAYADQIFTLGEELEEVMRFRPGGRPLQFRVGVADA--XTIAYLLLETALKLE 118 NDAGR V YAD+IFTLGEEL+EV+RFRPGG PLQFRVGVADA IAYLLLE A++L Sbjct: 61 NDAGRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELP 120 Query: 119 DPVRIVCREGKLNNLLGDLAIHRLDIVIADSPMPGNIDVRGYSHLLGECSTSFFATPALA 178 + +RIVCREGKL NLL DLA+HRLDIVIADSPMP NIDVRGY+HLLGEC +FFAT ALA Sbjct: 121 ESLRIVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGMTFFATDALA 180 Query: 179 KAHKKNFPQSLDGAPFLMPGEDAAVRPKLLRWFEKEKIRPQIAGEFDDGALLNAFGEAGT 238 K ++K+FP+SLD APFLMPGEDAAVRP+L+RWFEKEK+RP+I GEFDDGALL AFGEAG Sbjct: 181 KTYQKDFPKSLDAAPFLMPGEDAAVRPRLIRWFEKEKVRPRIVGEFDDGALLQAFGEAGK 240 Query: 239 GIFAAPSAVAAQLKQQLGVVQIGQTEQITEQFYAISVERRLTHPAVLAIQSAARESLI 296 GIFAAPSAVA Q+K+Q GV +IG+T ++EQFYAISVER+LTHPAV+AI SAARESLI Sbjct: 241 GIFAAPSAVAEQIKKQYGVTEIGRTNAVSEQFYAISVERQLTHPAVVAISSAARESLI 298 >ref|YP_001100752.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62631.1| Putative regulatory protein, LysR family [Herminiimonas arsenicoxydans] Length = 296 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/295 (76%), Positives = 258/295 (87%), Gaps = 2/295 (0%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQITLFEETLGYRLFNRVGRKLELNDA 63 +NYKHLHYFW VAK GGI RA ERLHLT QTISGQITLFE+ LGY+LFNR+GR+LELNDA Sbjct: 1 MNYKHLHYFWVVAKAGGIGRASERLHLTPQTISGQITLFEDVLGYKLFNRIGRRLELNDA 60 Query: 64 GRTVFAYADQIFTLGEELEEVMRFRPGGRPLQFRVGVADAX--TIAYLLLETALKLEDPV 121 GR V YAD+IFTLGEEL+EV+RFRPGG PLQFRVGVADA IAYLLLE A++L + + Sbjct: 61 GRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELPESL 120 Query: 122 RIVCREGKLNNLLGDLAIHRLDIVIADSPMPGNIDVRGYSHLLGECSTSFFATPALAKAH 181 R+VCREGKL NLL DLA+HRLDIVIADSPMP NIDVRGY+HLLGEC +FFAT LAK + Sbjct: 121 RLVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGVTFFATDELAKEY 180 Query: 182 KKNFPQSLDGAPFLMPGEDAAVRPKLLRWFEKEKIRPQIAGEFDDGALLNAFGEAGTGIF 241 ++ FP+SLDGAPFLMPGEDAAVRP+L+RWFEKEK+RP+I GEFDDGALL AFG AG GIF Sbjct: 181 EEGFPKSLDGAPFLMPGEDAAVRPRLIRWFEKEKVRPRIIGEFDDGALLQAFGGAGKGIF 240 Query: 242 AAPSAVAAQLKQQLGVVQIGQTEQITEQFYAISVERRLTHPAVLAIQSAARESLI 296 AAPSAVA Q+ +Q GV +IG+T +TEQFYAISVER+LTHPAV+AI SAARESLI Sbjct: 241 AAPSAVADQIIKQYGVTEIGRTSLVTEQFYAISVERQLTHPAVVAISSAARESLI 295 >ref|YP_003777308.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65400.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 228/299 (76%), Positives = 266/299 (88%), Gaps = 2/299 (0%) Query: 1 MAALNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQITLFEETLGYRLFNRVGRKLEL 60 MA LNYKHLHYFWTVAKTGG+ARA ERLHLTAQTISGQ++LFEE+LGY LF RVGR+LEL Sbjct: 1 MAGLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQLSLFEESLGYPLFRRVGRRLEL 60 Query: 61 NDAGRTVFAYADQIFTLGEELEEVMRFRPGGRPLQFRVGVADA--XTIAYLLLETALKLE 118 ND GR VF YA++IF++GEELEE +R RPGGR LQ RVGVADA IAYLLLE+AL ++ Sbjct: 61 NDEGRMVFDYAERIFSIGEELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQ 120 Query: 119 DPVRIVCREGKLNNLLGDLAIHRLDIVIADSPMPGNIDVRGYSHLLGECSTSFFATPALA 178 DP+RI+CREGKL+ LL DLA+H+LDI+IADSPMP N+DVRGY HLLGEC TSFFATP LA Sbjct: 121 DPIRIICREGKLDVLLADLALHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPELA 180 Query: 179 KAHKKNFPQSLDGAPFLMPGEDAAVRPKLLRWFEKEKIRPQIAGEFDDGALLNAFGEAGT 238 + ++K FP S DGAPFLMPGEDAAVRP+LLRWFEKEKIRP+I GEFDDGALL AFG+AG Sbjct: 181 RRYRKGFPGSFDGAPFLMPGEDAAVRPRLLRWFEKEKIRPRITGEFDDGALLLAFGDAGA 240 Query: 239 GIFAAPSAVAAQLKQQLGVVQIGQTEQITEQFYAISVERRLTHPAVLAIQSAARESLII 297 GIFAAP+A+AAQ+++Q G+V+IG+TE I EQFYAISV+R+LTHPAVLAIQSAAR +LI+ Sbjct: 241 GIFAAPAAIAAQIRKQYGLVEIGRTEAIREQFYAISVQRKLTHPAVLAIQSAARGNLIV 299 >ref|ZP_04589201.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI03655.1| regulatory protein, LysR substrate-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 300 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 165/299 (55%), Positives = 221/299 (73%), Gaps = 2/299 (0%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQITLFEETLGYRLFNRVGRKLELNDA 63 LNY+ LHYFW VAKTG I RA E+L+LTAQT+SGQI+L E +LG LF RVGR+LE+ +A Sbjct: 2 LNYRQLHYFWVVAKTGSIVRACEQLNLTAQTVSGQISLLEASLGVDLFQRVGRQLEMTEA 61 Query: 64 GRTVFAYADQIFTLGEELEEVMRFRPGGRPLQFRVGVADAX--TIAYLLLETALKLEDPV 121 GR YA+Q+F LG ELE ++R +P + L FR+GVAD +I Y L+ + L++ + Sbjct: 62 GRLALPYAEQMFQLGNELENLLRSQPDEQQLLFRIGVADVVPKSIVYRLISPTMNLQESI 121 Query: 122 RIVCREGKLNNLLGDLAIHRLDIVIADSPMPGNIDVRGYSHLLGECSTSFFATPALAKAH 181 RI CRE KL+ LL DLAI RLD+VI+DSPMP ++D++GYSH LGEC SFFAT +A+ Sbjct: 122 RITCREDKLDRLLADLAIQRLDLVISDSPMPPHLDIKGYSHKLGECGVSFFATREVAERV 181 Query: 182 KKNFPQSLDGAPFLMPGEDAAVRPKLLRWFEKEKIRPQIAGEFDDGALLNAFGEAGTGIF 241 +FPQ L GAP L+PG++ VR +L+RWF ++KI+P+I GEFDD AL+ AFG++G+GIF Sbjct: 182 GDDFPQCLHGAPLLIPGQETVVRGRLMRWFAEQKIQPRIVGEFDDSALMKAFGKSGSGIF 241 Query: 242 AAPSAVAAQLKQQLGVVQIGQTEQITEQFYAISVERRLTHPAVLAIQSAARESLIIPKG 300 APS +AA+++ Q V IGQT+ +TE FYAI+VER++ HP V+AI +AR L G Sbjct: 242 VAPSVIAAEVQSQYAVQVIGQTDAVTESFYAITVERKVKHPGVVAIAESARNQLFTDAG 300 >ref|YP_261095.1| transcriptional activator protein NhaR [Pseudomonas fluorescens Pf-5] gb|AAY93259.1| transcriptional activator protein NhaR [Pseudomonas fluorescens Pf-5] Length = 301 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 165/297 (55%), Positives = 218/297 (73%), Gaps = 2/297 (0%) Query: 4 LNYKHLHYFWTVAKTGGIARAGERLHLTAQTISGQITLFEETLGYRLFNRVGRKLELNDA 63 LNY+ LHYFW VAKTG I RA ++L+LT QTISGQI+L E+T G LF RVGR+LEL +A Sbjct: 2 LNYRQLHYFWVVAKTGSIVRACDQLNLTPQTISGQISLLEQTYGIELFRRVGRQLELTEA 61 Query: 64 GRTVFAYADQIFTLGEELEEVMRFRPGGRPLQFRVGVADA--XTIAYLLLETALKLEDPV 121 GR YA+Q+F LG ELE ++R RP + +QFRVGVAD +I Y L+ ++L +P+ Sbjct: 62 GRQALPYAEQMFQLGGELEAMLRARPDEQQIQFRVGVADVVPKSIVYRLIAPTMELSEPI 121 Query: 122 RIVCREGKLNNLLGDLAIHRLDIVIADSPMPGNIDVRGYSHLLGECSTSFFATPALAKAH 181 R+ CRE KL LL DLAI RLD+VI+DSPMP ++D++GYS LGEC SFFAT LA+ H Sbjct: 122 RLTCREDKLERLLADLAIQRLDLVISDSPMPSHLDIKGYSQKLGECGISFFATEELARRH 181 Query: 182 KKNFPQSLDGAPFLMPGEDAAVRPKLLRWFEKEKIRPQIAGEFDDGALLNAFGEAGTGIF 241 +FP+ L GAP L+PG++ VR +LLRWF +++++P+I GEFDD AL+ AFG++G+GIF Sbjct: 182 GADFPRGLHGAPLLIPGQETVVRSRLLRWFAEQQLQPRIIGEFDDSALMQAFGQSGSGIF 241 Query: 242 AAPSAVAAQLKQQLGVVQIGQTEQITEQFYAISVERRLTHPAVLAIQSAARESLIIP 298 APS +A ++ Q GV IGQT+ + E FYAISVER++ HP ++AI AR L P Sbjct: 242 IAPSVIADEVMHQYGVQLIGQTDAVAESFYAISVERKVKHPGIVAITEGARRELFTP 298