BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0023.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751160.1| LysR family transcriptional regulator [Colli... 386 e-105 ref|YP_003777309.1| LysR family transcription regulator [Herbasp... 386 e-105 ref|YP_004686452.1| LysR family transcriptional regulator [Cupri... 291 1e-76 ref|YP_002006255.1| lysr family transcription regulator [Cupriav... 290 2e-76 ref|YP_727213.1| LysR family transcriptional regulator [Ralstoni... 289 3e-76 >ref|YP_004751160.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60337.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 291 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/288 (64%), Positives = 226/288 (78%), Gaps = 1/288 (0%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPA 60 M++ +LEIFR VV EGGITRAAE+LHRVQSNVTTRIRQLE S+GV LF R+ KRL+LTPA Sbjct: 1 MDLLSLEIFRTVVREGGITRAAEQLHRVQSNVTTRIRQLETSLGVSLFSRNNKRLVLTPA 60 Query: 61 GEILLDYSERILGLVQEARQAVLPQGPRGRLRVGAMESTAASRLPAPLAAFHQRWPEVQL 120 GE LL Y+ER+L L EAR+AV P P+GRLR+G+MESTAASRLP PLA FHQ WP VQL Sbjct: 61 GETLLGYAERLLNLAGEAREAVQPAVPQGRLRIGSMESTAASRLPLPLARFHQEWPAVQL 120 Query: 121 ELTTSASQMLIDQVRAFKLDAALVAGPIDDDVFVATPLYQEELVIVVPRGHARVKSPDDL 180 EL+T A+Q LID+VRAF LDAALVAGP+DD +F PLY EELV++ R H + PDD+ Sbjct: 121 ELSTGATQQLIDRVRAFTLDAALVAGPLDDPLFEMLPLYAEELVVLAARNHPPISGPDDV 180 Query: 181 TVETLIVFEQGCAYRKRAEHWFASGTIKGRRPARLLELGSYHAMLACVAAGAGIAFVPRT 240 TL+ FE GCAYR+ AE+W ASG++ GRRP R+LELGSYHAMLACVAAGAGIA PR+ Sbjct: 181 QSRTLVAFEHGCAYRRHAENWLASGSVPGRRPDRILELGSYHAMLACVAAGAGIALAPRS 240 Query: 241 ILNMHGQ-QNFSTYSLGKEGRITTYLICRHDQQTTVYDALRTLLLTES 287 +L +H Q+ +TY +G G++TTYLI RHD + +DAL +L E+ Sbjct: 241 VLELHNNTQSLATYPIGPAGQVTTYLIRRHDYSSPAFDALSQILQAEA 288 >ref|YP_003777309.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ65401.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 296 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/285 (65%), Positives = 238/285 (83%), Gaps = 2/285 (0%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPA 60 ME+A LEIFR VV+EGG+TRAAERL+RVQSNVTTRI+QLE+S+GVPLF+RDR+R++LT A Sbjct: 10 MELAELEIFRTVVAEGGVTRAAERLNRVQSNVTTRIKQLEQSMGVPLFVRDRRRMVLTAA 69 Query: 61 GEILLDYSERILGLVQEARQAVLPQGPRGRLRVGAMESTAASRLPAPLAAFHQRWPEVQL 120 GE LLDY+ERIL L QEARQAV PQ PRGRLR+G+MES AASRLP PLA FHQRWPEV+L Sbjct: 70 GEALLDYAERILDLAQEARQAVAPQSPRGRLRIGSMESAAASRLPGPLAEFHQRWPEVRL 129 Query: 121 ELTTSASQMLIDQVRAFKLDAALVAGPIDDDVFVATPLYQEELVIVVPRGHARVKSPDDL 180 EL+T+ + +L+ QVRA KLDAALVAGP+ D F ATPL++EEL++V PR H RV++P+++ Sbjct: 130 ELSTAPTDVLMAQVRACKLDAALVAGPVSDPAFDATPLFREELLLVTPRSHRRVRAPEEV 189 Query: 181 TVETLIVFEQGCAYRKRAEHWFASGTIKGRRPARLLELGSYHAMLACVAAGAGIAFVPRT 240 ++TLIVFEQGCAYR+ AE WFA G GR+ R LEL SYHA+LACV+AGAG+A VPR+ Sbjct: 190 MLDTLIVFEQGCAYRRHAEAWFA-GHGAGRQLPRTLELASYHAILACVSAGAGVAVVPRS 248 Query: 241 ILNMHGQ-QNFSTYSLGKEGRITTYLICRHDQQTTVYDALRTLLL 284 ++ M + F+T+SLG++GRITT+LI R ++ + + ALR LL+ Sbjct: 249 VIAMQMEPHGFATHSLGRDGRITTFLISRRERYSASFLALRALLM 293 >ref|YP_004686452.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI77971.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 297 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 152/288 (52%), Positives = 198/288 (68%), Gaps = 4/288 (1%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPA 60 M++AALEIFRAVV GGITRAAERLHRVQSNVTTRIRQLE+S+GV LF+RD +R++LTP+ Sbjct: 1 MDLAALEIFRAVVEAGGITRAAERLHRVQSNVTTRIRQLEQSLGVDLFVRDGRRMVLTPS 60 Query: 61 GEILLDYSERILGLVQEARQAVLPQGPRGRLRVGAMESTAASRLPAPLAAFHQRWPEVQL 120 G+ L DY+ RIL + +EARQAVLP P GRLR+ +MESTAASRLP LAA+HQ WP+VQL Sbjct: 61 GQTLFDYACRILSMTEEARQAVLPARPHGRLRIASMESTAASRLPNVLAAYHQAWPDVQL 120 Query: 121 ELTTSASQMLIDQVRAFKLDAALVAGPIDDDVFVATPLYQEELVIVVPRGHARVKSPDDL 180 EL T A++ +D + F+++ A VA P+ D A P+++EELV++ H V + DL Sbjct: 121 ELVTLATRQALDALARFEVECAFVAEPLTDPGLSAVPVFEEELVVITRDRHRPVHTAADL 180 Query: 181 TVETLIVFEQGCAYRKRAEHWFASGTIKGRRPARLLELGSYHAMLACVAAGAGIAFVPRT 240 V TL+ FE GC YR R E+W+ G R+L+L SYHA++ACVAAG G A VPR+ Sbjct: 181 EVPTLLAFEPGCNYRARLENWYVIGDAPT---PRVLQLSSYHAIVACVAAGIGAAIVPRS 237 Query: 241 ILNMHGQ-QNFSTYSLGKEGRITTYLICRHDQQTTVYDALRTLLLTES 287 +L ++ +SLG GR+ T L + AL L T+S Sbjct: 238 VLGLYRDLPAIRQHSLGAAGRVRTLLAWHPSMASAALHALIDTLTTQS 285 >ref|YP_002006255.1| lysr family transcription regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70192.1| putative TRANSCRIPTIONal REGULATOR, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 299 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/280 (53%), Positives = 193/280 (68%), Gaps = 4/280 (1%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPA 60 M++AALEIFRAVV GGITRAAERLHRVQSNVTTRIRQLE+++GV LF+RD +R++LTP+ Sbjct: 1 MDLAALEIFRAVVEAGGITRAAERLHRVQSNVTTRIRQLEQTLGVDLFVRDGRRMVLTPS 60 Query: 61 GEILLDYSERILGLVQEARQAVLPQGPRGRLRVGAMESTAASRLPAPLAAFHQRWPEVQL 120 G+ L DY+ RIL L +EARQA+LP P GRLR+ +MESTAASRLP LAA+HQ WPEVQL Sbjct: 61 GQTLFDYACRILTLTEEARQALLPARPHGRLRIASMESTAASRLPQVLAAYHQAWPEVQL 120 Query: 121 ELTTSASQMLIDQVRAFKLDAALVAGPIDDDVFVATPLYQEELVIVVPRGHARVKSPDDL 180 EL T A++ D + F++D A VA P+ D A P+++EELV++ H V DL Sbjct: 121 ELVTLATRQAFDALARFEVDCAFVAEPLADPALRAVPVFEEELVVITREHHRPVHGAADL 180 Query: 181 TVETLIVFEQGCAYRKRAEHWFASGTIKGRRPARLLELGSYHAMLACVAAGAGIAFVPRT 240 V TL+ FE GC YR R E W+ SG R+L+L SYHA++ACVAAG G A VPR+ Sbjct: 181 EVPTLLAFEPGCNYRARLETWYGSGPAPT---PRVLQLSSYHAIVACVAAGIGAAIVPRS 237 Query: 241 ILNMHGQ-QNFSTYSLGKEGRITTYLICRHDQQTTVYDAL 279 +L ++ +SLG GR+ T L + + AL Sbjct: 238 VLGLYRDLPAIRQHSLGAAGRVRTLLAWQPSMASAALHAL 277 >ref|YP_727213.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ93845.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 297 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/288 (52%), Positives = 196/288 (68%), Gaps = 4/288 (1%) Query: 1 MEIAALEIFRAVVSEGGITRAAERLHRVQSNVTTRIRQLEESVGVPLFIRDRKRLLLTPA 60 M++AALEIFRAVV GGITRAAERLHRVQSNVTTRIRQLE+S+GV LF+RD +R++LTP+ Sbjct: 1 MDLAALEIFRAVVEAGGITRAAERLHRVQSNVTTRIRQLEQSLGVDLFVRDGRRMVLTPS 60 Query: 61 GEILLDYSERILGLVQEARQAVLPQGPRGRLRVGAMESTAASRLPAPLAAFHQRWPEVQL 120 G+ L DY+ RIL + +EARQAVLP P GRLR+ +MESTAASRLP LAA+HQ WP VQL Sbjct: 61 GQTLFDYACRILSMTEEARQAVLPARPHGRLRIASMESTAASRLPNVLAAYHQAWPAVQL 120 Query: 121 ELTTSASQMLIDQVRAFKLDAALVAGPIDDDVFVATPLYQEELVIVVPRGHARVKSPDDL 180 EL T A++ +D + F+++ A VA P+ D A P+++EELV++ H V++ DL Sbjct: 121 ELVTLATRQALDALARFEVECAFVAEPLTDPALSAVPVFEEELVVITRARHRPVRTAADL 180 Query: 181 TVETLIVFEQGCAYRKRAEHWFASGTIKGRRPARLLELGSYHAMLACVAAGAGIAFVPRT 240 V TL+ FE GC YR R E+W+ G R+L+L SYHA++ACVAAG G A VPR+ Sbjct: 181 EVPTLLAFEPGCNYRARLENWYVIGDAPT---PRVLQLSSYHAIVACVAAGIGAAIVPRS 237 Query: 241 ILNMHGQ-QNFSTYSLGKEGRITTYLICRHDQQTTVYDALRTLLLTES 287 +L ++ +SLG GR+ T L + AL L S Sbjct: 238 VLGLYRDLPAIRQHSLGAAGRVRTLLAWHPSMASAALHALIDTLTAHS 285