BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0022.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777310.1| transport protein [Herbaspirillum seropedica... 451 e-124 ref|YP_004751158.1| hypothetical protein CFU_0498 [Collimonas fu... 426 e-117 ref|YP_002980794.1| hypothetical protein Rpic12D_0821 [Ralstonia... 409 e-112 ref|ZP_07675678.1| major facilitator superfamily transporter pro... 407 e-111 ref|YP_001898334.1| hypothetical protein Rpic_0751 [Ralstonia pi... 396 e-108 >ref|YP_003777310.1| transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ65402.1| transport protein [Herbaspirillum seropedicae SmR1] Length = 412 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 243/392 (61%), Positives = 294/392 (75%), Gaps = 1/392 (0%) Query: 10 QANRKTALRIALSGLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSNYLGYFI 69 Q NR + ++ L+G++ALSVAMGIGRFAFTPLLP+MLH+ +++L GGWLAT+NYLGYF+ Sbjct: 18 QRNR-LSWKVCLAGMVALSVAMGIGRFAFTPLLPLMLHEGSLNLQMGGWLATANYLGYFV 76 Query: 70 GALLCAFWRGLPPTRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALVFVYSSG 129 GA+ CA R R +R GL+A +LLT GMG LWLL+R LSG+ASA VFVY++G Sbjct: 77 GAMACAVHRSKRGVRMLRIGLVATILLTLGMGLLQWNWLWLLMRFLSGVASAYVFVYTAG 136 Query: 130 WCLQRLAQLQLPALGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMAALLTLL 189 WCL +L QLQ P LGG+I+ GPGLGI LTGL + M++ GW AA GW+A+G++A LT L Sbjct: 137 WCLHQLTQLQRPELGGVIFCGPGLGIALTGLLTGPMISAGWVAAGGWIAYGIIALGLTAL 196 Query: 190 VWKTFRGEVDLRAGAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITATFLPVIA 249 VW+TFR + +AAT + D E REV QV+AYG+AGFGYIITATFLPVIA Sbjct: 197 VWQTFRFDAGQGQASAATTTTDASAQESPRQKREVTVQVIAYGIAGFGYIITATFLPVIA 256 Query: 250 RQALPGSSWPDFFWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVIISAILPN 309 RQALPGS+WPD+FWP+FGL VA GA ATR VH DQR LL +Y+MQA GV++S + PN Sbjct: 257 RQALPGSAWPDYFWPIFGLSVAAGAFSATRFSVHTDQRLLLTAAYLMQAAGVLLSILFPN 316 Query: 310 EFGFALGSILLGLPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPPLATKLV 369 +GFAL +LLGLPFTAITLF MREARRLR A LM LMTA+YGIGQIAGPPLAT LV Sbjct: 317 AWGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLATSLV 376 Query: 370 HVSGSFTPSLSIAAATLLAGAGVYGWLATRDR 401 H SGSFTPSL +AA TL+ GA +Y L R Sbjct: 377 HASGSFTPSLCVAAITLIIGAALYYRLTRTHR 408 >ref|YP_004751158.1| hypothetical protein CFU_0498 [Collimonas fungivorans Ter331] gb|AEK60335.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 402 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/372 (64%), Positives = 283/372 (76%), Gaps = 5/372 (1%) Query: 4 QHTQDTQANRKTALRIALSGLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSN 63 Q T + A R+AL+G +AL+VAMGIGRFAFTPLLPMMLHD IDL +GGWLAT+N Sbjct: 6 QATALETGQGRAAWRVALAGALALAVAMGIGRFAFTPLLPMMLHDGAIDLAAGGWLATAN 65 Query: 64 YLGYFIGALLCAFWRGLPPTRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALV 123 Y+GY IGALLC R TR I+ GL++ VLLT GMG HS LWLLLR L+G++SA Sbjct: 66 YIGYLIGALLCMVLR-TDATRAIKLGLVSTVLLTLGMGWLHSPALWLLLRTLAGVSSACT 124 Query: 124 FVYSSGWCLQRLAQLQLPALGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMA 183 FV++SGWCLQRLAQLQ PALGGIIY GPGLGI++TGL++SAM+ W A GW+ +GL+A Sbjct: 125 FVFASGWCLQRLAQLQAPALGGIIYCGPGLGILITGLATSAMIGQHWRAEHGWLLYGLLA 184 Query: 184 ALLTLLVWKTFRGEVDLRAGAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITAT 243 +LT LVW TF G A AA T S EPA R+ R +AY LAGFGYIITAT Sbjct: 185 LILTALVWSTFSGS----AAAAGTPSPAAHGLEPAQAARQTRGLTIAYALAGFGYIITAT 240 Query: 244 FLPVIARQALPGSSWPDFFWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVII 303 FLPVIARQALPGS+WPD FWPLFG+CV++GAL ATR+P H D R LLA Y++QA G+I+ Sbjct: 241 FLPVIARQALPGSNWPDLFWPLFGICVSIGALLATRLPTHWDNRLLLAACYLLQAGGIIV 300 Query: 304 SAILPNEFGFALGSILLGLPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPP 363 + P+ GFALGSILLGLPFTAITLFAMR+ARRLR HA LMGL+TA+YG+GQI GPP Sbjct: 301 GLVSPSVAGFALGSILLGLPFTAITLFAMRDARRLRGDHARSLMGLLTATYGVGQIIGPP 360 Query: 364 LATKLVHVSGSF 375 LAT+LV SG+F Sbjct: 361 LATRLVQGSGNF 372 >ref|YP_002980794.1| hypothetical protein Rpic12D_0821 [Ralstonia pickettii 12D] gb|ACS62122.1| protein of unknown function DUF1228 [Ralstonia pickettii 12D] Length = 404 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 230/385 (59%), Positives = 276/385 (71%), Gaps = 7/385 (1%) Query: 10 QANRKTALRIALSGLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSNYLGYFI 69 + R TA R+A++G++ALSVAMGIGRFAFTP+LPMMLHD ++ L G WLAT NYLGYF+ Sbjct: 15 HSQRATAWRVAIAGMVALSVAMGIGRFAFTPILPMMLHDGSLTLAQGSWLATGNYLGYFV 74 Query: 70 GALLCAFWRGLPPTRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALVFVYSSG 129 GAL C RG R IR GL+A VLLTAGMG Q WLLLR +G+ASALVFV+++G Sbjct: 75 GALACMAVRG-DAARLIRIGLVATVLLTAGMGVLQGQPAWLLLRFAAGMASALVFVFTAG 133 Query: 130 WCLQRLAQLQLPALGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMAALLTLL 189 WCL RL +L ALGGII+ GPGLGI + GL++S MVA GWHA + W+AFG+++ALL+ Sbjct: 134 WCLHRLTELGHAALGGIIFCGPGLGIAIPGLAASGMVALGWHATSAWIAFGVLSALLSAA 193 Query: 190 VWKTFRGEVDLRAGAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITATFLPVIA 249 VW T R E A A S + AP + +AYGLAGFGYIITATFLPVIA Sbjct: 194 VWSTIRPEAPAHAAPAPAASGKAPGLD-APTSA----LTIAYGLAGFGYIITATFLPVIA 248 Query: 250 RQALP-GSSWPDFFWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVIISAILP 308 R+ LP GS WPD FWP+FG VALGA +TRI + D R LLA +Y MQA+ V IS + P Sbjct: 249 RKVLPAGSLWPDLFWPMFGAGVALGAFLSTRISLARDNRSLLATAYGMQAVAVTISIVWP 308 Query: 309 NEFGFALGSILLGLPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPPLATKL 368 G AL S LLGLPFTAITLFAMREARRL H AP LMGLMTA+YGIGQIAGPPLA +L Sbjct: 309 TVAGLALSSTLLGLPFTAITLFAMREARRLWPHAAPRLMGLMTAAYGIGQIAGPPLANRL 368 Query: 369 VHVSGSFTPSLSIAAATLLAGAGVY 393 +G F SL++AA +L+AG ++ Sbjct: 369 FAATGGFNASLAVAAVSLVAGVVIF 393 >ref|ZP_07675678.1| major facilitator superfamily transporter protein [Ralstonia sp. 5_7_47FAA] gb|EFP65900.1| major facilitator superfamily transporter protein [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 228/385 (59%), Positives = 276/385 (71%), Gaps = 7/385 (1%) Query: 10 QANRKTALRIALSGLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSNYLGYFI 69 + R +A R+A++G++ALSVAMGIGRFAFTP+LPMMLHD ++ L G WLAT NYLGYF+ Sbjct: 15 HSQRASAWRVAIAGMVALSVAMGIGRFAFTPILPMMLHDGSLTLAQGSWLATGNYLGYFV 74 Query: 70 GALLCAFWRGLPPTRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALVFVYSSG 129 GAL C RG R IR GL+A VLLTAGMG Q WL+LR +G+ASALVFV+++G Sbjct: 75 GALACMAVRG-DAARLIRIGLVATVLLTAGMGVLQGQPAWLVLRFAAGMASALVFVFTAG 133 Query: 130 WCLQRLAQLQLPALGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMAALLTLL 189 WCL RL +L ALGGII+ GPGLGI + GL++S MVA GWHA + W+AFG+++ALL+ Sbjct: 134 WCLHRLTELGHAALGGIIFCGPGLGIAIPGLAASGMVALGWHATSAWIAFGVLSALLSAA 193 Query: 190 VWKTFRGEVDLRAGAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITATFLPVIA 249 VW T R E A A S + AP + +AYGLAGFGYIITATFLPVIA Sbjct: 194 VWSTIRPEAPAHAAPAPAASGKAPGLD-APTSA----LTIAYGLAGFGYIITATFLPVIA 248 Query: 250 RQALP-GSSWPDFFWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVIISAILP 308 R+ LP GS WPD FWP+FG VALGA +TRI + D R LLA +Y MQA+ V IS + P Sbjct: 249 RKVLPAGSLWPDLFWPMFGAGVALGAFLSTRISLARDNRSLLATAYGMQAVAVTISIVWP 308 Query: 309 NEFGFALGSILLGLPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPPLATKL 368 G AL S LLGLPFTAITLFAMREARRL H AP LMGLMTA+YGIGQIAGPPLA +L Sbjct: 309 TVAGLALSSTLLGLPFTAITLFAMREARRLWPHAAPRLMGLMTAAYGIGQIAGPPLANRL 368 Query: 369 VHVSGSFTPSLSIAAATLLAGAGVY 393 +G F SL++AA +L+AG ++ Sbjct: 369 FAATGGFNASLAVAAVSLVAGVVIF 393 >ref|YP_001898334.1| hypothetical protein Rpic_0751 [Ralstonia pickettii 12J] gb|ACD25902.1| protein of unknown function DUF1228 [Ralstonia pickettii 12J] Length = 404 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/372 (60%), Positives = 266/372 (71%), Gaps = 7/372 (1%) Query: 23 GLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSNYLGYFIGALLCAFWRGLPP 82 G++ALSVAMGIGRFAFTP+LPMMLHD ++ L G WLAT NYLGYF+GAL C RG Sbjct: 28 GMVALSVAMGIGRFAFTPILPMMLHDGSLTLAQGSWLATGNYLGYFVGALACMAVRG-DA 86 Query: 83 TRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALVFVYSSGWCLQRLAQLQLPA 142 R IR GL+A VLLTAGMG Q WLLLR +G+ASALVFV+++GWCL RL +L A Sbjct: 87 ARLIRTGLVATVLLTAGMGVLQGQPAWLLLRFAAGMASALVFVFTAGWCLHRLTELGHAA 146 Query: 143 LGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMAALLTLLVWKTFRGEVDLRA 202 LGGII+ GPGLGI + GL++S MVA GWHA + W+AFG+++ALL+ VW T R E A Sbjct: 147 LGGIIFCGPGLGIAIPGLAASGMVALGWHATSAWIAFGVLSALLSAAVWSTIRPEAPAHA 206 Query: 203 GAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITATFLPVIARQALP-GSSWPDF 261 A S + AP + +AYGLAGFGYIITATFLPVIAR+ LP GS WPD Sbjct: 207 APAPAASGKAPGLD-APTSA----LTIAYGLAGFGYIITATFLPVIARKVLPAGSLWPDL 261 Query: 262 FWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVIISAILPNEFGFALGSILLG 321 FWP+FG VALGA +TRI + D R LLA +Y MQA+ V IS + P G AL S LLG Sbjct: 262 FWPMFGAGVALGAFLSTRISLARDNRSLLATAYGMQAVAVTISIVWPTVAGLALSSTLLG 321 Query: 322 LPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPPLATKLVHVSGSFTPSLSI 381 LPFTAITLFAMREARRL H P LMGLMTA+YGIGQIAGPPLA +L +G F SL++ Sbjct: 322 LPFTAITLFAMREARRLWPHAVPRLMGLMTAAYGIGQIAGPPLANRLFAATGGFNASLAV 381 Query: 382 AAATLLAGAGVY 393 AA +L+AG ++ Sbjct: 382 AAVSLMAGVVIF 393