BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0006.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774478.1| TetR family transcription regulator protein ... 344 5e-93 ref|YP_293277.1| regulatory protein, TetR [Ralstonia eutropha JM... 285 2e-75 ref|NP_902893.1| transcription regulator, TetR family [Chromobac... 264 5e-69 ref|YP_004847640.1| TetR family transcriptional regulator [Pseud... 264 8e-69 ref|ZP_03697361.1| transcriptional regulator, TetR family [Lutie... 263 2e-68 >ref|YP_003774478.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62570.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 344 bits (882), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 165/201 (82%), Positives = 184/201 (91%) Query: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGAKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSIFGKLSFKDQAFKLRENAILDAATSVLG+KGYDLMTMDDVAGAVGISKPSLYKHFKSK Sbjct: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 Query: 61 EDLVGEALIRLIDGAVDYLAQLDDALSPKSKLAALLEWALRVRLDGGLPFLPSTSAHVRD 120 E+L+GE +IRLIDGA+D LAQL+ + KL A+LEWALRVRL+GGLPFLPSTSA VRD Sbjct: 61 EELIGETMIRLIDGAIDQLAQLEHIAGARDKLEAMLEWALRVRLEGGLPFLPSTSAPVRD 120 Query: 121 MLMRNLKYVTRVLKLNGQIEKLVLAAQKNGELDAALPSDVILFSYYARTCDPAVEYLQRF 180 MLMRN+KYV RVLKLNGQ+EKLV AQK GELDAALPSDV+L+SYYARTCDPAV+YLQ+F Sbjct: 121 MLMRNVKYVMRVLKLNGQLEKLVKEAQKAGELDAALPSDVVLYSYYARTCDPAVDYLQKF 180 Query: 181 SKMSNEDIVQHMLQVAFEGFH 201 SKM NEDI+++ML VAF+GF Sbjct: 181 SKMGNEDIIKYMLHVAFKGFE 201 >ref|YP_293277.1| regulatory protein, TetR [Ralstonia eutropha JMP134] gb|AAZ65420.1| regulatory protein, TetR [Ralstonia eutropha JMP134] Length = 204 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/200 (69%), Positives = 162/200 (81%) Query: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGAKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 M I GKLSFKDQ F+LRE+AILDA T +L KG+DLMTMDDVAG VGISKP LYKHFKSK Sbjct: 1 MGILGKLSFKDQTFRLREDAILDATTRILADKGFDLMTMDDVAGEVGISKPILYKHFKSK 60 Query: 61 EDLVGEALIRLIDGAVDYLAQLDDALSPKSKLAALLEWALRVRLDGGLPFLPSTSAHVRD 120 +DLVG A+IRLIDGA+D+L QL + +L ALL WALRVRL+GGLPFLPSTS HVR+ Sbjct: 61 DDLVGAAMIRLIDGAIDFLEQLPQQETAMGRLRALLAWALRVRLEGGLPFLPSTSPHVRE 120 Query: 121 MLMRNLKYVTRVLKLNGQIEKLVLAAQKNGELDAALPSDVILFSYYARTCDPAVEYLQRF 180 ML NL YVTRV KLNG ++ LV A+K+G+LDAALP DVILFSYY+RTCDPAVEYL+ + Sbjct: 121 MLTHNLGYVTRVFKLNGILKGLVGEAKKSGDLDAALPDDVILFSYYSRTCDPAVEYLRLY 180 Query: 181 SKMSNEDIVQHMLQVAFEGF 200 +K+ +E IV HML V F G Sbjct: 181 AKLDDERIVAHMLDVCFHGI 200 >ref|NP_902893.1| transcription regulator, TetR family [Chromobacterium violaceum ATCC 12472] gb|AAQ60889.1| probable transcription regulator, TetR Family [Chromobacterium violaceum ATCC 12472] Length = 211 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 125/200 (62%), Positives = 159/200 (79%) Query: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGAKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 M I G+LSFKDQAFKLRE A+LDA T +L +KG+DLMTMDDVAG GISKPSLYKHFKSK Sbjct: 1 MGILGRLSFKDQAFKLREQAVLDATTRMLASKGFDLMTMDDVAGEAGISKPSLYKHFKSK 60 Query: 61 EDLVGEALIRLIDGAVDYLAQLDDALSPKSKLAALLEWALRVRLDGGLPFLPSTSAHVRD 120 ++L E +IRL+D A D+LA+ LSP ++L LL WALRVRL+GGLPFLPS S VR Sbjct: 61 DELATEVMIRLLDDAQDFLARQAPELSPLARLRDLLAWALRVRLEGGLPFLPSASPQVRA 120 Query: 121 MLMRNLKYVTRVLKLNGQIEKLVLAAQKNGELDAALPSDVILFSYYARTCDPAVEYLQRF 180 ML R+L+YV+R +KL+ ++ +V A++ GEL A +P+DVIL+SYY+RTCDPAVEYL+ + Sbjct: 121 MLTRSLRYVSRAIKLHKTLQGIVEQAKRQGELRADMPTDVILYSYYSRTCDPAVEYLRVY 180 Query: 181 SKMSNEDIVQHMLQVAFEGF 200 K +EDIV+HML+V F+G Sbjct: 181 GKYPDEDIVRHMLEVCFDGM 200 >ref|YP_004847640.1| TetR family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK77226.1| transcriptional regulator, TetR family [Pseudogulbenkiania sp. NH8B] Length = 203 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 125/200 (62%), Positives = 157/200 (78%) Query: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGAKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSI KLSFKDQAFKLRE A+LDA T +L +KG+DLMTMDDVAG GISKPSLYKHFKSK Sbjct: 1 MSILSKLSFKDQAFKLREQAVLDATTKLLASKGFDLMTMDDVAGEAGISKPSLYKHFKSK 60 Query: 61 EDLVGEALIRLIDGAVDYLAQLDDALSPKSKLAALLEWALRVRLDGGLPFLPSTSAHVRD 120 EDL E +IRL+DGA++YL LD +S K +L +LLEWALRVRL GGLPFLPS+S VR Sbjct: 61 EDLATEVMIRLLDGALEYLDGLDAGMSGKERLGSLLEWALRVRLQGGLPFLPSSSPQVRA 120 Query: 121 MLMRNLKYVTRVLKLNGQIEKLVLAAQKNGELDAALPSDVILFSYYARTCDPAVEYLQRF 180 ML RN++YVTRV +L+ Q++ +V A+ GE+ LP+DVIL++YY+RTCDPAV+Y++ + Sbjct: 121 MLTRNIRYVTRVYQLHKQLQGMVDKAKAAGEIRDDLPTDVILYAYYSRTCDPAVDYMKDY 180 Query: 181 SKMSNEDIVQHMLQVAFEGF 200 S++DIV HM + F G Sbjct: 181 GHYSDDDIVAHMRSMIFTGI 200 >ref|ZP_03697361.1| transcriptional regulator, TetR family [Lutiella nitroferrum 2002] gb|EEG09847.1| transcriptional regulator, TetR family [Lutiella nitroferrum 2002] Length = 203 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/200 (62%), Positives = 157/200 (78%) Query: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGAKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSI KLSFKDQAFKLRE A+LDA T +L +KG+DLMTMDDVAG GISKPSLYKHFKSK Sbjct: 1 MSILSKLSFKDQAFKLREQAVLDATTKLLASKGFDLMTMDDVAGEAGISKPSLYKHFKSK 60 Query: 61 EDLVGEALIRLIDGAVDYLAQLDDALSPKSKLAALLEWALRVRLDGGLPFLPSTSAHVRD 120 EDL E +IRL+DGA++YL LD +S K +L +LLEWALRVRL GGLPFLPS+S VR Sbjct: 61 EDLATEVMIRLLDGALEYLDGLDAGMSGKERLGSLLEWALRVRLQGGLPFLPSSSPQVRA 120 Query: 121 MLMRNLKYVTRVLKLNGQIEKLVLAAQKNGELDAALPSDVILFSYYARTCDPAVEYLQRF 180 ML RN++YVTRV +L+ Q++ +V ++ GE+ LP+DVIL++YY+RTCDPAV+Y++ + Sbjct: 121 MLTRNIRYVTRVYQLHKQLQGMVDKSKAAGEIRDDLPTDVILYAYYSRTCDPAVDYMKDY 180 Query: 181 SKMSNEDIVQHMLQVAFEGF 200 S++DIV HM + F G Sbjct: 181 GHYSDDDIVAHMRTMIFTGI 200