BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0221.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774595.1| 3-deoxy-manno-octulosonate cytidylyltransfer...   144   6e-33
ref|YP_001354267.1| 3-deoxy-manno-octulosonate cytidylyltransfer...   142   2e-32
ref|YP_001100737.1| CTP:CMP-3-deoxy-D-manno-octulosonate transfe...   140   8e-32
ref|ZP_04577890.1| CTP:CMP-3-deoxy-D-manno-octulosonate transfer...   124   3e-27
ref|ZP_04580041.1| CTP:CMP-3-deoxy-D-manno-octulosonate transfer...   120   9e-26

>ref|YP_003774595.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62687.1| 3-deoxy-manno-octulosonate cytidylyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  144 bits (362), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 84/91 (92%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADVPMATAA 60
           MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATA HIK  VPMATAA
Sbjct: 67  MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAAHIKPGVPMATAA 126

Query: 61  HAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           HAIE   + FNPNVVKVVL+KEGCAMYFSRA
Sbjct: 127 HAIESAADAFNPNVVKVVLNKEGCAMYFSRA 157


>ref|YP_001354267.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO
           synthetase) [Janthinobacterium sp. Marseille]
 sp|A6T170.1|KDSB_JANMA RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase;
           AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid
           synthase; Short=CKS; Short=CMP-KDO synthase
 gb|ABR88825.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO
           synthetase) [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 78/91 (85%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADVPMATAA 60
           MTRADHPSGTDRIAEVAA + L ++AVVVNVQGDEPLIDP LIAATA  I  DVPMATAA
Sbjct: 67  MTRADHPSGTDRIAEVAALIGLPDEAVVVNVQGDEPLIDPSLIAATATLISRDVPMATAA 126

Query: 61  HAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           HAI  + E+FNPNVVKVVLDK G A+YFSRA
Sbjct: 127 HAISEIEEVFNPNVVKVVLDKSGRALYFSRA 157


>ref|YP_001100737.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Herminiimonas
           arsenicoxydans]
 sp|A4G7X9.1|KDSB_HERAR RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase;
           AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid
           synthase; Short=CKS; Short=CMP-KDO synthase
 emb|CAL62616.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO
           synthetase) (CMP-2-keto-3-deoxyoctulosonic acid
           synthetase) (CKS) [Herminiimonas arsenicoxydans]
          Length = 250

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 78/91 (85%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADVPMATAA 60
           MTR DHPSGTDRIAEVAA L L++DAV+VNVQGDEPLIDP LIAATA  I  +VPMATAA
Sbjct: 67  MTRTDHPSGTDRIAEVAAVLGLSDDAVIVNVQGDEPLIDPSLIAATATLISREVPMATAA 126

Query: 61  HAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           H I+ + + FNPNVVKVVLDK+G A+YFSRA
Sbjct: 127 HTIDDIADAFNPNVVKVVLDKQGRALYFSRA 157


>ref|ZP_04577890.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Oxalobacter
           formigenes HOxBLS]
 gb|EEO28852.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Oxalobacter
           formigenes HOxBLS]
          Length = 254

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 71/91 (78%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADVPMATAA 60
           MTR DHPSGTDRIAEVA  +D A    VVNVQGDEPLIDP LIAATA  +  +VPMATAA
Sbjct: 67  MTRKDHPSGTDRIAEVAEKMDWAPFDTVVNVQGDEPLIDPELIAATASLVSEEVPMATAA 126

Query: 61  HAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           H +E   ++FNPN VKVVLD+ G A+YFSRA
Sbjct: 127 HRMERPEDIFNPNYVKVVLDRLGRALYFSRA 157


>ref|ZP_04580041.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Oxalobacter
           formigenes OXCC13]
 gb|EEO31014.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Oxalobacter
           formigenes OXCC13]
          Length = 250

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADVPMATAA 60
           +TR DH SGTDRIAEV+A ++ +   VVVNVQGDEPLIDP LI+ATA  +  +VPMATAA
Sbjct: 69  LTRKDHVSGTDRIAEVSAKMNWSATDVVVNVQGDEPLIDPELISATAALVSENVPMATAA 128

Query: 61  HAIELLPEMFNPNVVKVVLDKEGCAMYFSRAA 92
           H +E   E+FNPN VKVVLD+   A+YFSRAA
Sbjct: 129 HRMEQPDEIFNPNFVKVVLDRFNKALYFSRAA 160