BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0203.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02907336.1| periplasmic protein [Burkholderia ambifaria M...    98   4e-19
ref|YP_001579148.1| periplasmic protein [Burkholderia multivoran...    98   4e-19
ref|YP_001808931.1| periplasmic protein [Burkholderia ambifaria ...    98   5e-19
ref|YP_774246.1| periplasmic protein [Burkholderia ambifaria AMM...    98   5e-19
ref|ZP_04945117.1| hypothetical protein BDAG_00998 [Burkholderia...    96   2e-18

>ref|ZP_02907336.1| periplasmic protein [Burkholderia ambifaria MEX-5]
 gb|EDT41527.1| periplasmic protein [Burkholderia ambifaria MEX-5]
          Length = 127

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 4/113 (3%)

Query: 18  ALPGATLAKTTPPSLNLPDVKIQSQQRLIYQCAGDVRLPVR---YLNTNAGALAYLPVAG 74
           AL G  ++      L + ++   ++++ +YQCA +++ PVR   +   N  + A +PV G
Sbjct: 10  ALAGTAVSAAHAAQLTVEEIDADAREQTVYQCA-NLKQPVRVSYWRAANGQSFALVPVNG 68

Query: 75  KRQLFVSVLAASGAKYAAGRYVWWSKGKEGFLADETLGENAEPILKDCKQIEK 127
           ++ LFV  ++ASGA+Y AGRY WW+KG+EG L DE   +NA P+L DC Q+EK
Sbjct: 69  QQLLFVDTVSASGARYQAGRYTWWTKGREGTLRDEIADQNAAPLLGDCMQVEK 121


>ref|YP_001579148.1| periplasmic protein [Burkholderia multivorans ATCC 17616]
 ref|YP_001946735.1| hypothetical protein BMULJ_02304 [Burkholderia multivorans ATCC
           17616]
 gb|ABX14651.1| periplasmic protein [Burkholderia multivorans ATCC 17616]
 dbj|BAG44199.1| probable exported protein [Burkholderia multivorans ATCC 17616]
          Length = 127

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 9   LLAAVAASAALPGATLAKTTPPSLNLPDVKIQSQQRLIYQCAGDVRLPVR---YLNTNAG 65
           ++    A+ AL G T++      L + ++   ++Q + YQCA   + PVR   +L  N  
Sbjct: 1   MIRQTVAALALAGLTVSVAHAAQLTIEEIDADARQTVAYQCANQPQ-PVRVSYWLAGNGQ 59

Query: 66  ALAYLPVAGKRQLFVSVLAASGAKYAAGRYVWWSKGKEGFLADETLGENAEPILKDCKQI 125
           + A +PV G+R LFV  ++ASG +Y AGRY WW+KGKEG L DE   E A P+L DC QI
Sbjct: 60  SFALVPVNGQRLLFVDTVSASGVRYQAGRYTWWTKGKEGTLRDEIADEKAPPLLADCVQI 119

Query: 126 EK 127
           +K
Sbjct: 120 DK 121


>ref|YP_001808931.1| periplasmic protein [Burkholderia ambifaria MC40-6]
 gb|ACB64715.1| periplasmic protein [Burkholderia ambifaria MC40-6]
          Length = 127

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 15  ASAALPGATLAKTTPPSLNLPDVKIQSQQRLIYQCAGDVRLPVR---YLNTNAGALAYLP 71
           A+ AL G+ ++      L + ++   ++++ IYQCA +++ PVR   +   N  + A +P
Sbjct: 7   AALALAGSAVSVAHAAQLTVEEIDADAREQTIYQCA-NLKRPVRVSYWRAANGQSFALVP 65

Query: 72  VAGKRQLFVSVLAASGAKYAAGRYVWWSKGKEGFLADETLGENAEPILKDCKQIE 126
           V G++ LFV  ++ASGA+Y AGRY WW+KG+EG L DE   +NA P+L DC Q+E
Sbjct: 66  VNGQQLLFVDTVSASGARYQAGRYTWWTKGREGTLRDEIADQNAAPLLGDCMQVE 120


>ref|YP_774246.1| periplasmic protein [Burkholderia ambifaria AMMD]
 ref|ZP_02892548.1| periplasmic protein [Burkholderia ambifaria IOP40-10]
 gb|ABI87912.1| periplasmic protein [Burkholderia ambifaria AMMD]
 gb|EDT01867.1| periplasmic protein [Burkholderia ambifaria IOP40-10]
          Length = 127

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 4/115 (3%)

Query: 15  ASAALPGATLAKTTPPSLNLPDVKIQSQQRLIYQCAGDVRLPVR---YLNTNAGALAYLP 71
           A+ AL G+ ++      L + ++   ++++ IYQCA +++ PVR   +   N  + A +P
Sbjct: 7   AALALAGSAVSVAHAAQLTVEEIDADAREQTIYQCA-NLKQPVRVSYWRAANGQSFALVP 65

Query: 72  VAGKRQLFVSVLAASGAKYAAGRYVWWSKGKEGFLADETLGENAEPILKDCKQIE 126
           V G++ LFV  ++ASGA+Y AGRY WW+KG+EG L DE   +NA P+L DC Q+E
Sbjct: 66  VNGQQLLFVDTVSASGARYQAGRYTWWTKGREGTLRDEIADQNAAPLLGDCMQVE 120


>ref|ZP_04945117.1| hypothetical protein BDAG_00998 [Burkholderia dolosa AUO158]
 gb|EAY68288.1| hypothetical protein BDAG_00998 [Burkholderia dolosa AUO158]
          Length = 126

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 4/116 (3%)

Query: 15  ASAALPGATLAKTTPPSLNLPDVKIQSQQRLIYQCAGDVRLPVR---YLNTNAGALAYLP 71
           A+ AL GAT++      L + ++   ++Q ++YQCA   + PVR   +L  N  + A +P
Sbjct: 7   AALALAGATVSVAHAAQLTVEEIDADARQLVVYQCANQ-KQPVRVSYWLAGNGQSFALVP 65

Query: 72  VAGKRQLFVSVLAASGAKYAAGRYVWWSKGKEGFLADETLGENAEPILKDCKQIEK 127
           V G+R LFV  ++ASG +Y AGRY WW+KG+E  L DE    ++ P+L DC Q+EK
Sbjct: 66  VDGQRLLFVDTVSASGVRYQAGRYTWWTKGREATLRDEIADPSSPPLLADCVQVEK 121