BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0200.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsen... 355 2e-96 ref|YP_004751889.1| DNA repair protein RadC [Collimonas fungivor... 333 1e-89 ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium s... 332 2e-89 ref|ZP_04576044.1| DNA repair protein radC [Oxalobacter formigen... 323 8e-87 ref|ZP_04578235.1| DNA repair protein radC [Oxalobacter formigen... 316 1e-84 >ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsenicoxydans] sp|A4G7V9.1|Y2468_HERAR RecName: Full=UPF0758 protein HEAR2468 emb|CAL62596.1| DNA repair protein RadC homolog [Herminiimonas arsenicoxydans] Length = 224 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 175/224 (78%), Positives = 189/224 (84%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAITDWPE+QRPRERLIR GA LSDAELLAVFLRVGVTGKSAVDLGRDMV HFGSL L Sbjct: 1 MAITDWPEEQRPRERLIRHGAAILSDAELLAVFLRVGVTGKSAVDLGRDMVAHFGSLNGL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 FSA L DF INGLGPAKYAQLQAVLEL+RR+L EEL G L+SP+AV YLQLL G+ Sbjct: 61 FSATLNDFSKINGLGPAKYAQLQAVLELARRSLCEELQAGVALNSPQAVKQYLQLLLSGR 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 AYESFV+LFLDVKNRLI +EMFRGTLT SVYPREIVKAAL NAA VILAHNHPSG P Sbjct: 121 AYESFVILFLDVKNRLIVCDEMFRGTLTHTSVYPREIVKAALGHNAASVILAHNHPSGTP 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPS+AD LTQ L+QAL L++VRVLDH VVAG+ +SFAE GQL Sbjct: 181 EPSAADQTLTQALKQALMLIDVRVLDHFVVAGKQVYSFAEQGQL 224 >ref|YP_004751889.1| DNA repair protein RadC [Collimonas fungivorans Ter331] gb|AEK61066.1| DNA repair protein RadC [Collimonas fungivorans Ter331] Length = 224 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 164/224 (73%), Positives = 184/224 (82%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAITDWP DQRPRERLI+ G +LS+AELLAVFLRVG GKSAVDLGR+M HFGSL L Sbjct: 1 MAITDWPADQRPRERLIKLGPQALSNAELLAVFLRVGAAGKSAVDLGREMTSHFGSLNRL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 FSA L +FC I+GLGPAK+AQLQA+LEL RR+LAEEL G++ +P AV YLQLL K Sbjct: 61 FSAPLKEFCAIHGLGPAKFAQLQAILELGRRSLAEELQAGSSFDAPAAVKQYLQLLLTNK 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 +ESF+VLFLDVKNRLI AEE+FRGTLT ASVYPRE+VKAAL NAA V+LAHNHPSG Sbjct: 121 PHESFLVLFLDVKNRLICAEELFRGTLTHASVYPREVVKAALTHNAASVMLAHNHPSGTL 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPSSAD LTQTL+QAL L+ VRVLDH +VAG HSFAEHGQL Sbjct: 181 EPSSADRQLTQTLKQALDLIGVRVLDHFIVAGTEVHSFAEHGQL 224 >ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium sp. Marseille] sp|A6T144.1|Y2551_JANMA RecName: Full=UPF0758 protein mma_2551 gb|ABR88373.1| DNA repair protein [Janthinobacterium sp. Marseille] Length = 224 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 162/224 (72%), Positives = 184/224 (82%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAI+DWPE RPRERLI+ GA L+DAELLA+FLR+GV GKSAVDL RDM+ HFGSL AL Sbjct: 1 MAISDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHAL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 FSA L DF +NGLGPAKYAQLQAVLEL+RR+L+EEL G +L+SP+AV YLQLL GK Sbjct: 61 FSASLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGK 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 YE+F VLFLDVKNRLI EE+FRGTLT SVYPREIVK AL NAA VILAHNHPSG Sbjct: 121 PYEAFAVLFLDVKNRLIACEELFRGTLTHTSVYPREIVKEALTHNAASVILAHNHPSGSS 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPS+AD LTQ L+QAL L++VRVLDH VV G++ +SFAEHG L Sbjct: 181 EPSAADHSLTQALKQALALIDVRVLDHFVVGGKNVYSFAEHGHL 224 >ref|ZP_04576044.1| DNA repair protein radC [Oxalobacter formigenes HOxBLS] gb|EEO27006.1| DNA repair protein radC [Oxalobacter formigenes HOxBLS] Length = 224 Score = 323 bits (829), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 152/224 (67%), Positives = 188/224 (83%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAITDWP +RPRERLI+ G LSDAELLA+FLR G +GKSAVDLGR+++ HFGSL L Sbjct: 1 MAITDWPSHERPRERLIKGGPEQLSDAELLAIFLRTGTSGKSAVDLGREIMMHFGSLSGL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 F+ARL DF +NG+GPAKYAQLQA+LEL+RR LAE+L +G L+S + V +YLQL F + Sbjct: 61 FAARLKDFSDLNGVGPAKYAQLQAILELARRLLAEDLQSGIALTSSEKVMNYLQLYFSRQ 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 A+ESF+VLFLD+KN+LIE+ EMFRGTL+ SVYPRE+VKAAL RNAA VI AHNHP G Sbjct: 121 AHESFIVLFLDIKNKLIESSEMFRGTLSHTSVYPREVVKAALGRNAANVIFAHNHPFGSA 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPS+AD LT++L+QALGLV++RVLDHI+VAG++T+SFAE+G L Sbjct: 181 EPSNADKTLTRSLKQALGLVDIRVLDHIIVAGKNTYSFAEYGIL 224 >ref|ZP_04578235.1| DNA repair protein radC [Oxalobacter formigenes OXCC13] gb|EEO29208.1| DNA repair protein radC [Oxalobacter formigenes OXCC13] Length = 224 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 183/224 (81%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAITDWP RPRERLI+ G LSDAELLA+FLR G +GKSAVDLGR+++ HFGSL L Sbjct: 1 MAITDWPAHDRPRERLIKGGPQYLSDAELLAIFLRTGTSGKSAVDLGREIMMHFGSLSRL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 FSA+L DF +NG+GPAK+AQLQA++EL+RR LAE+L G TLSS V +YLQL F Sbjct: 61 FSAQLKDFSDLNGIGPAKFAQLQAIVELARRLLAEDLQNGVTLSSSDKVMNYLQLYFSRL 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 +ESFVVL LD+KN+LIE EMFRGTL+Q SVYPRE+VKAALA N+A VI AHNHPSG+ Sbjct: 121 THESFVVLHLDIKNKLIECSEMFRGTLSQTSVYPREVVKAALANNSASVIFAHNHPSGKA 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 +PS+AD LT L+QALGLV++RVLDHI+VAG++T+SFAE+G L Sbjct: 181 DPSNADKTLTHALKQALGLVDIRVLDHIIVAGKNTYSFAEYGFL 224