BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0196.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773612.1| branched-chain amino acid ABC transporter pe... 717 0.0 ref|YP_003774614.1| branched-chain amino acid ABC transporter pe... 694 0.0 ref|YP_004751893.1| branched-chain amino acid transport system p... 676 0.0 ref|ZP_08275505.1| Branched-chain amino acid transport system pe... 649 0.0 ref|YP_001354237.1| ABC-type branched-chain amino acid transport... 624 e-177 >ref|YP_003773612.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61704.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/405 (89%), Positives = 380/405 (93%), Gaps = 1/405 (0%) Query: 1 MAFLTFDKKRNPQQARISLAALLIIMIAFPFVASMFGNSWVRIMDMALLYIMLALGLNVV 60 MA LTFD KRNPQQARISL LL +MI FPFVA FGNSWVRIMD+ALLYIMLALGLNVV Sbjct: 1 MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60 Query: 61 VGFAGLLDLGYIAFYAIGAYTAGLLASPQFADVLQSFVNTYPAVGNFLVMVCGPQIVQTG 120 VGFAGLLDLGYIAFYAIGAY+AGLLASPQFA V++SFVNTYP+VGNFLV +CGP+IVQ G Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSAGLLASPQFAAVIESFVNTYPSVGNFLVWLCGPEIVQNG 120 Query: 121 IHLSLWIIVPLSALIAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 IHLSLW+IVP+SA +AALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT Sbjct: 121 IHLSLWLIVPISAFLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 Query: 181 NGPQGINLIDPIRVFGVSLAGEPGSGSIVKFLGFSMPSVNAYYFLFLLLCIGVIFFSIRL 240 NGPQGINLIDPI+VFGVSLAGEPGSGS+VK G SMPSVNAYYFLFLLLCIGVIFFS+RL Sbjct: 181 NGPQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRL 240 Query: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFASFQGFVSPESF 300 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMF +FQGFVSPESF Sbjct: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 Query: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMSLFGKVWIDAEVLR 360 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQM++FGKVWIDAEVLR Sbjct: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLR 360 Query: 361 QLLYGLAMVIIMLNRPAGLWPSPRHEDRPEADHPHGSDAVGVVKA 405 QLLYGLAMV+IML RPAGLWPSPRHEDRPEADH G VKA Sbjct: 361 QLLYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQ-VGTTGEVKA 404 >ref|YP_003774614.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62706.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/405 (89%), Positives = 381/405 (94%), Gaps = 1/405 (0%) Query: 1 MAFLTFDKKRNPQQARISLAALLIIMIAFPFVASMFGNSWVRIMDMALLYIMLALGLNVV 60 MA LTFD KRNPQQARISL LL +MI FPFVA FGNSWVRIMD+ALLYIMLALGLNVV Sbjct: 1 MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60 Query: 61 VGFAGLLDLGYIAFYAIGAYTAGLLASPQFADVLQSFVNTYPAVGNFLVMVCGPQIVQTG 120 VGFAGLLDLGYIAFYAIGAY+AGLLASPQFA V++SFVNTYP+VGNFLV +CGP+IVQ G Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSAGLLASPQFAAVIESFVNTYPSVGNFLVWLCGPEIVQNG 120 Query: 121 IHLSLWIIVPLSALIAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 IHLSLW+IVP+SAL+AALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT Sbjct: 121 IHLSLWLIVPISALLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 Query: 181 NGPQGINLIDPIRVFGVSLAGEPGSGSIVKFLGFSMPSVNAYYFLFLLLCIGVIFFSIRL 240 NGPQGINLIDPI+VFGVSLAGEPGSGS+VK G SMPSVNAYYFLFLLLCIGVIFFS+RL Sbjct: 181 NGPQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRL 240 Query: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFASFQGFVSPESF 300 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMF +FQGFVSPESF Sbjct: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 Query: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMSLFGKVWIDAEVLR 360 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQM++FGKVWIDAEVLR Sbjct: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLR 360 Query: 361 QLLYGLAMVIIMLNRPAGLWPSPRHEDRPEADHPHGSDAVGVVKA 405 QLLYGLAMV+IML RPAGLWPSPRHEDRPEADH G VKA Sbjct: 361 QLLYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQ-VGTTGEVKA 404 >ref|YP_004751893.1| branched-chain amino acid transport system permease [Collimonas fungivorans Ter331] gb|AEK61070.1| Branched-chain amino acid transport system permease protein [Collimonas fungivorans Ter331] Length = 404 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/400 (83%), Positives = 365/400 (91%) Query: 6 FDKKRNPQQARISLAALLIIMIAFPFVASMFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K+NP +A SL AL I+ + FPF+AS FGNSWVRIMD ALLYIMLALGLN+VVGFAG Sbjct: 5 FDTKKNPTKAYTSLVALAILFMIFPFIASNFGNSWVRIMDFALLYIMLALGLNIVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFADVLQSFVNTYPAVGNFLVMVCGPQIVQTGIHLSL 125 LLDLGYIAFYAIGAY GLLASPQFA VL+SFVNTYPA+GNFLVMVCGP+IVQ GIHLSL Sbjct: 65 LLDLGYIAFYAIGAYMTGLLASPQFASVLESFVNTYPAIGNFLVMVCGPEIVQNGIHLSL 124 Query: 126 WIIVPLSALIAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W+IVPL A +A LFGA+LGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG Sbjct: 125 WVIVPLGAALAGLFGAILGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSIVKFLGFSMPSVNAYYFLFLLLCIGVIFFSIRLQDSRL 245 INLIDPIR+FGVSLAGE GS + V GF MPSVNAYYFLFL+LC+ +IF SIRLQ+SRL Sbjct: 185 INLIDPIRIFGVSLAGERGSSATVYVAGFGMPSVNAYYFLFLVLCMAIIFISIRLQNSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFASFQGFVSPESFSLTES 305 GRAWVAIREDEIAAKAMGINTRN+KLLAF+MGASFGGVAGAMFASFQGFVSPESFSLTES Sbjct: 245 GRAWVAIREDEIAAKAMGINTRNMKLLAFSMGASFGGVAGAMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMSLFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGVVLGG++LAALPEVLRH VEP+QM++FGKV IDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVVLGGILLAALPEVLRHTVEPMQMAVFGKVLIDAEVLRQLLYG 364 Query: 366 LAMVIIMLNRPAGLWPSPRHEDRPEADHPHGSDAVGVVKA 405 LAMV+IML RPAGLWPSP+HEDRP+AD + + GVVKA Sbjct: 365 LAMVVIMLTRPAGLWPSPKHEDRPDADIDNPTAPTGVVKA 404 >ref|ZP_08275505.1| Branched-chain amino acid transport system permease protein livM [Oxalobacteraceae bacterium IMCC9480] gb|EGF31026.1| Branched-chain amino acid transport system permease protein livM [Oxalobacteraceae bacterium IMCC9480] Length = 404 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/400 (79%), Positives = 356/400 (89%) Query: 6 FDKKRNPQQARISLAALLIIMIAFPFVASMFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K NP++A I + + +I+I FPF+A +GNSWVRIMD ALLYIMLALGLN+VVGFAG Sbjct: 5 FDTKTNPRKAYIGMGIIALIVIVFPFIAQNYGNSWVRIMDFALLYIMLALGLNIVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFADVLQSFVNTYPAVGNFLVMVCGPQIVQTGIHLSL 125 LLDLGYIAFYA+GAY LLASPQFA VL+SFVN YPA+GN LV + GP+I + GIHLS+ Sbjct: 65 LLDLGYIAFYALGAYLTALLASPQFAVVLESFVNQYPAIGNALVALFGPEIREHGIHLSI 124 Query: 126 WIIVPLSALIAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W IVPLSAL A +FGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLN PVNITNGPQG Sbjct: 125 WFIVPLSALFAGVFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSIVKFLGFSMPSVNAYYFLFLLLCIGVIFFSIRLQDSRL 245 IN+IDPIR+FGVSLAGEPGS + + F FSMPSVNAYY+ FL LCI +IF S+RLQDSRL Sbjct: 185 INMIDPIRIFGVSLAGEPGSRANLVFGSFSMPSVNAYYYFFLALCIAIIFVSVRLQDSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFASFQGFVSPESFSLTES 305 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAG+MFASFQGFVSPESFSLTES Sbjct: 245 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGSMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMSLFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGV+LGG+ILAALPEVLRH VEP+QM++FGKVWIDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVILGGIILAALPEVLRHTVEPIQMAIFGKVWIDAEVLRQLLYG 364 Query: 366 LAMVIIMLNRPAGLWPSPRHEDRPEADHPHGSDAVGVVKA 405 LAMV+IML+RPAGLWP+P+HEDRP+ D A G+V A Sbjct: 365 LAMVVIMLSRPAGLWPAPKHEDRPDGDIDKPEKATGIVAA 404 >ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89269.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/398 (79%), Positives = 347/398 (87%) Query: 6 FDKKRNPQQARISLAALLIIMIAFPFVASMFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K NP++A L +L I + FPF+A FGNSWVRIMD ALLYIMLALGLNVVVGFAG Sbjct: 5 FDTKNNPRKAYSGLLLILAIALVFPFIAQNFGNSWVRIMDFALLYIMLALGLNVVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFADVLQSFVNTYPAVGNFLVMVCGPQIVQTGIHLSL 125 LLDLGYIAFYAIGAY LLASPQFA VL+SFVN YPA+G L+ V GP+I Q GIHLSL Sbjct: 65 LLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWVFGPEIAQNGIHLSL 124 Query: 126 WIIVPLSALIAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W IVPL+AL+A FGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLN PVNITNGPQG Sbjct: 125 WAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSIVKFLGFSMPSVNAYYFLFLLLCIGVIFFSIRLQDSRL 245 IN+IDPIR+FGVSL GE GS + V ++MPSVNAYYFLFL LCI +IF S+RLQ+SRL Sbjct: 185 INMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFLFLCIAIIFISVRLQNSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFASFQGFVSPESFSLTES 305 GRA+VAIREDEIAAKAMGINTRNVKLLAFAMGASFGG+AGAMFASFQGFVSPESFSLTES Sbjct: 245 GRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMSLFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGVVLGG+ILAALPEVLRHVVEP+Q SLFG+V IDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQSLFGEVLIDAEVLRQLLYG 364 Query: 366 LAMVIIMLNRPAGLWPSPRHEDRPEADHPHGSDAVGVV 403 LAMV+IML RP+GLWPSP+ EDRP AD+ + VV Sbjct: 365 LAMVLIMLYRPSGLWPSPKSEDRPTADNDTAKKSTDVV 402