BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0183.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit H... 434 e-119 ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit H... 426 e-117 ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit ... 421 e-115 ref|YP_004754691.1| ATP-dependent hsl protease ATP-binding subun... 410 e-112 ref|ZP_04579928.1| ATP-dependent protease ATP-binding subunit [O... 401 e-109 >ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] Length = 449 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/274 (80%), Positives = 234/274 (85%), Gaps = 16/274 (5%) Query: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRXKRAVAIALRNRRQQVAEPLRHEIT 60 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWR RQQVAEPLRHEIT Sbjct: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWR------------RQQVAEPLRHEIT 48 Query: 61 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 120 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 108 Query: 121 QTREGEVRKVRARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQT 180 QTRE E RKVRARAEDAAEDR++DIL+PPARDFGF P + + D G+ TRQT Sbjct: 109 QTRELETRKVRARAEDAAEDRIIDILVPPARDFGFHPSSSTGS----DTAPSTGNATRQT 164 Query: 181 FRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKKTRKVKI 240 FRKRLREG LDD EIEIEL+E+ P+MEIMAPPGMEEMTEQIKSMFSG+G RKKTRKVKI Sbjct: 165 FRKRLREGTLDDTEIEIELAEAGPSMEIMAPPGMEEMTEQIKSMFSGVGGTRKKTRKVKI 224 Query: 241 REAMKFLIEEEAGKLVNEEELKQKAIDVASDDGV 274 +EAMK LIEEEAGKLVNE+ELKQKAI +G+ Sbjct: 225 KEAMKLLIEEEAGKLVNEDELKQKAITNVEQNGI 258 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 82/104 (78%), Positives = 89/104 (85%) Query: 272 DGVEEKGSTTRQTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSG 331 D G+ TRQTFRKRLREG LDD EIEIEL+E+ P+MEIMAPPGMEEMTEQIKSMFSG Sbjct: 152 DTAPSTGNATRQTFRKRLREGTLDDTEIEIELAEAGPSMEIMAPPGMEEMTEQIKSMFSG 211 Query: 332 MGNNRKKTRKVKIREAMKFLIEEEAGKLVNEEELKQKAIANHRQ 375 +G RKKTRKVKI+EAMK LIEEEAGKLVNE+ELKQKAI N Q Sbjct: 212 VGGTRKKTRKVKIKEAMKLLIEEEAGKLVNEDELKQKAITNVEQ 255 >ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] Length = 445 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 217/272 (79%), Positives = 229/272 (84%), Gaps = 18/272 (6%) Query: 3 MTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRXKRAVAIALRNRRQQVAEPLRHEITPK 62 MTP+EIVSELDKHVVGQG AKRAVAIALRNRWR RQQVAEPLRHEITPK Sbjct: 1 MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWR------------RQQVAEPLRHEITPK 48 Query: 63 NILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQT 122 NILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQT Sbjct: 49 NILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQT 108 Query: 123 REGEVRKVRARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFR 182 RE E RKVRARAEDAAEDRV+DIL+PPARDFGF P + S+D + TRQTFR Sbjct: 109 REAETRKVRARAEDAAEDRVIDILVPPARDFGFHPSATSTSDHSND------NATRQTFR 162 Query: 183 KRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKKTRKVKIRE 242 KRLREG LDD EIEIEL+E+ P MEIMAPPGMEEMTEQIKSMFSG G NRKK RK+KIRE Sbjct: 163 KRLREGLLDDNEIEIELAEAGPTMEIMAPPGMEEMTEQIKSMFSGAGGNRKKARKIKIRE 222 Query: 243 AMKFLIEEEAGKLVNEEELKQKAIDVASDDGV 274 AMK LIEEEAGKLVNE+ELKQKAI +G+ Sbjct: 223 AMKLLIEEEAGKLVNEDELKQKAITNVEQNGI 254 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/97 (82%), Positives = 85/97 (87%) Query: 279 STTRQTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKK 338 + TRQTFRKRLREG LDD EIEIEL+E+ P MEIMAPPGMEEMTEQIKSMFSG G NRKK Sbjct: 155 NATRQTFRKRLREGLLDDNEIEIELAEAGPTMEIMAPPGMEEMTEQIKSMFSGAGGNRKK 214 Query: 339 TRKVKIREAMKFLIEEEAGKLVNEEELKQKAIANHRQ 375 RK+KIREAMK LIEEEAGKLVNE+ELKQKAI N Q Sbjct: 215 ARKIKIREAMKLLIEEEAGKLVNEDELKQKAITNVEQ 251 >ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 219/274 (79%), Positives = 238/274 (86%), Gaps = 17/274 (6%) Query: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRXKRAVAIALRNRRQQVAEPLRHEIT 60 MNMTPKEIVSELDKHVVGQ RAKRAV+IALRNRWR RQQ+ EPLRHEIT Sbjct: 1 MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWR------------RQQIEEPLRHEIT 48 Query: 61 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 120 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIK Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIK 108 Query: 121 QTREGEVRKVRARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQT 180 QTRE E RKVR RAEDAAEDR+LD+LLPPARDFGFTP+G+ N+ DD +TTRQT Sbjct: 109 QTRELETRKVRTRAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDD-----KNTTRQT 163 Query: 181 FRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKKTRKVKI 240 FRKRLREGALDDREIE+EL+E++P+MEIMAPPGMEEMTEQIKSMFSG+GN RKK RK+KI Sbjct: 164 FRKRLREGALDDREIELELAEAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKI 223 Query: 241 REAMKFLIEEEAGKLVNEEELKQKAIDVASDDGV 274 +EAMK LIEEEA KLVNEEELKQKAI +G+ Sbjct: 224 KEAMKLLIEEEAAKLVNEEELKQKAIANVEQNGI 257 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/109 (77%), Positives = 98/109 (89%) Query: 267 DVASDDGVEEKGSTTRQTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIK 326 D +++ G ++ +TTRQTFRKRLREGALDDREIE+EL+E++P+MEIMAPPGMEEMTEQIK Sbjct: 146 DGSNNSGEKDDKNTTRQTFRKRLREGALDDREIELELAEAAPSMEIMAPPGMEEMTEQIK 205 Query: 327 SMFSGMGNNRKKTRKVKIREAMKFLIEEEAGKLVNEEELKQKAIANHRQ 375 SMFSG+GN RKK RK+KI+EAMK LIEEEA KLVNEEELKQKAIAN Q Sbjct: 206 SMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEEELKQKAIANVEQ 254 >ref|YP_004754691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] gb|AEK63868.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] Length = 547 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/276 (79%), Positives = 238/276 (86%), Gaps = 19/276 (6%) Query: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRXKRAVAIALRNRRQQVAEPLRHEIT 60 MNMTP+EIVSELDKHVVGQ RAKRAVAIALRNRWR RQQ+AEPLRHEIT Sbjct: 97 MNMTPQEIVSELDKHVVGQDRAKRAVAIALRNRWR------------RQQIAEPLRHEIT 144 Query: 61 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 120 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK Sbjct: 145 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 204 Query: 121 QTREGEVRKVRARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDG--VEEKGSTTR 178 QTRE E+RKVR RAEDAAEDRV+DIL+PPARDFGF PE +S DG +KGS TR Sbjct: 205 QTREAEMRKVRTRAEDAAEDRVIDILVPPARDFGFHPEQ-----SSGDGENAGDKGSNTR 259 Query: 179 QTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKKTRKV 238 QTFRKRLREGALDD+EIEIELSE++ MEIMAPPGMEEMTEQIKSMFSG+G+NRKK RK+ Sbjct: 260 QTFRKRLREGALDDKEIEIELSEAASQMEIMAPPGMEEMTEQIKSMFSGIGSNRKKNRKI 319 Query: 239 KIREAMKFLIEEEAGKLVNEEELKQKAIDVASDDGV 274 KI++AMK LIEEEA KLVNE+ELKQKAI +G+ Sbjct: 320 KIKDAMKVLIEEEAAKLVNEDELKQKAISNVEQNGI 355 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/109 (77%), Positives = 96/109 (88%), Gaps = 2/109 (1%) Query: 269 ASDDG--VEEKGSTTRQTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIK 326 +S DG +KGS TRQTFRKRLREGALDD+EIEIELSE++ MEIMAPPGMEEMTEQIK Sbjct: 244 SSGDGENAGDKGSNTRQTFRKRLREGALDDKEIEIELSEAASQMEIMAPPGMEEMTEQIK 303 Query: 327 SMFSGMGNNRKKTRKVKIREAMKFLIEEEAGKLVNEEELKQKAIANHRQ 375 SMFSG+G+NRKK RK+KI++AMK LIEEEA KLVNE+ELKQKAI+N Q Sbjct: 304 SMFSGIGSNRKKNRKIKIKDAMKVLIEEEAAKLVNEDELKQKAISNVEQ 352 >ref|ZP_04579928.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] gb|EEO30901.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] Length = 443 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/274 (72%), Positives = 227/274 (82%), Gaps = 21/274 (7%) Query: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRXKRAVAIALRNRRQQVAEPLRHEIT 60 MN+TP +IV+ELDKHVVGQ +AKRAVAIALRNRWR RQQVAEPLRHEIT Sbjct: 1 MNLTPDQIVTELDKHVVGQSKAKRAVAIALRNRWR------------RQQVAEPLRHEIT 48 Query: 61 PKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIK 120 PKNILMIGPTGVGKTEIARRLA+LA+APFIKIEATKFTEVGYVGRDVDTIIRDL+DI IK Sbjct: 49 PKNILMIGPTGVGKTEIARRLARLAEAPFIKIEATKFTEVGYVGRDVDTIIRDLVDISIK 108 Query: 121 QTREGEVRKVRARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQT 180 QTRE E++KVR +A DAAEDRVL+IL+PP RDFGF S++ G TRQ Sbjct: 109 QTREAEMKKVRTKAIDAAEDRVLNILIPPPRDFGFN---------SNESNASSGENTRQV 159 Query: 181 FRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMFSGMGNNRKKTRKVKI 240 FRK+LREG+LDD+EIEIE+ ES P MEIMAPPGMEEMTEQIKSMFSGMG+ RKK+RKVK+ Sbjct: 160 FRKKLREGSLDDKEIEIEVDESGPHMEIMAPPGMEEMTEQIKSMFSGMGSGRKKSRKVKV 219 Query: 241 REAMKFLIEEEAGKLVNEEELKQKAIDVASDDGV 274 R+A+K LIEEEA KLVNE+EL+QKAI A +G+ Sbjct: 220 RDAIKLLIEEEAAKLVNEDELRQKAITNAEQNGI 253 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/106 (71%), Positives = 89/106 (83%) Query: 270 SDDGVEEKGSTTRQTFRKRLREGALDDREIEIELSESSPAMEIMAPPGMEEMTEQIKSMF 329 S++ G TRQ FRK+LREG+LDD+EIEIE+ ES P MEIMAPPGMEEMTEQIKSMF Sbjct: 145 SNESNASSGENTRQVFRKKLREGSLDDKEIEIEVDESGPHMEIMAPPGMEEMTEQIKSMF 204 Query: 330 SGMGNNRKKTRKVKIREAMKFLIEEEAGKLVNEEELKQKAIANHRQ 375 SGMG+ RKK+RKVK+R+A+K LIEEEA KLVNE+EL+QKAI N Q Sbjct: 205 SGMGSGRKKSRKVKVRDAIKLLIEEEAAKLVNEDELRQKAITNAEQ 250