BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0178.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774390.1| glycerol-3-phosphate regulon repressor trans...   180   5e-44
ref|ZP_08274029.1| Glycerol-3-phosphate regulon repressor, DeoR ...   130   5e-29
ref|YP_001792245.1| DeoR family transcriptional regulator [Lepto...   113   1e-23
ref|YP_002006011.1| glycerol-3-phosphate regulon repressor, deor...   111   3e-23
ref|YP_001631198.1| hypothetical protein Bpet2588 [Bordetella pe...   110   6e-23

>ref|YP_003774390.1| glycerol-3-phosphate regulon repressor transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62482.1| glycerol-3-phosphate regulon repressor transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score =  180 bits (457), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/94 (90%), Positives = 91/94 (96%)

Query: 2   MLNPRQQTLLDCVRKHITISVEELAQKLDVTTQTVRRDVKAMVDAKLLARYHGGVGLLSS 61
           MLNPRQQTLL+CVRKH TISVEELAQ+L+VTTQTVRRDVKAMVDA LLARYHGGVGLLSS
Sbjct: 17  MLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSS 76

Query: 62  TENIAYPQRQVMNAEAKQRIGKAVAARVPDGCSL 95
           TENIAYPQRQVM+AEAK+RIG+ VAARVPDGCSL
Sbjct: 77  TENIAYPQRQVMHAEAKRRIGRTVAARVPDGCSL 110


>ref|ZP_08274029.1| Glycerol-3-phosphate regulon repressor, DeoR family
          [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32493.1| Glycerol-3-phosphate regulon repressor, DeoR family
          [Oxalobacteraceae bacterium IMCC9480]
          Length = 253

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 77/95 (81%)

Query: 1  MMLNPRQQTLLDCVRKHITISVEELAQKLDVTTQTVRRDVKAMVDAKLLARYHGGVGLLS 60
          M LNPRQ+ LL+ VRK  TISVEELAQ+LDVT QTVRRDVK M  A+LLARYHGGVGL S
Sbjct: 1  MTLNPRQRQLLEVVRKRGTISVEELAQQLDVTPQTVRRDVKQMELARLLARYHGGVGLPS 60

Query: 61 STENIAYPQRQVMNAEAKQRIGKAVAARVPDGCSL 95
          S ENI Y QRQ++N++AKQRI  A AARVP G SL
Sbjct: 61 SVENIDYSQRQILNSDAKQRIAAAAAARVPAGSSL 95


>ref|YP_001792245.1| DeoR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gb|ACB35480.1| transcriptional regulator, DeoR family [Leptothrix cholodnii
          SP-6]
          Length = 257

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 4  NPRQQTLLDCVRKHITISVEELAQKLDVTTQTVRRDVKAMVDAKLLARYHGGVGLLSS-T 62
          NPRQ  +LD VR+  TISVE LA++  VT QTVRRDVK +  A LL R+HGGV L SS T
Sbjct: 6  NPRQAGVLDAVREQGTISVEALAERFGVTLQTVRRDVKLLSGAGLLTRFHGGVRLPSSTT 65

Query: 63 ENIAYPQRQVMNAEAKQRIGKAVAARVPDGCSL 95
          ENIAY QRQ +N +AK RI +AVA  VPDGCSL
Sbjct: 66 ENIAYRQRQQLNEDAKHRIARAVADAVPDGCSL 98


>ref|YP_002006011.1| glycerol-3-phosphate regulon repressor, deor family [Cupriavidus
          taiwanensis LMG 19424]
 emb|CAQ69948.1| Glycerol-3-phosphate regulon repressor, DeoR family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 256

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 71/96 (73%), Gaps = 1/96 (1%)

Query: 1  MMLNPRQQTLLDCVRKHITISVEELAQKLDVTTQTVRRDVKAMVDAKLLARYHGGVGLL- 59
          M LNPRQ  LL+ VR     S++ELA+K  VT QTVRRDV  + +  +LAR+HGGV +  
Sbjct: 1  MTLNPRQTALLEEVRTQGFASIDELARKFGVTLQTVRRDVNMLAENGMLARFHGGVRVED 60

Query: 60 SSTENIAYPQRQVMNAEAKQRIGKAVAARVPDGCSL 95
          S+TENIAY QRQV+NAE K RI +AVA+ VP+GCSL
Sbjct: 61 STTENIAYRQRQVLNAEGKARIARAVASAVPEGCSL 96


>ref|YP_001631198.1| hypothetical protein Bpet2588 [Bordetella petrii DSM 12804]
 emb|CAP42930.1| glpR [Bordetella petrii]
          Length = 268

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1  MMLNPRQQTLLDCVRKHITISVEELAQKLDVTTQTVRRDVKAMVDAKLLARYHGGVGLLS 60
          M LNPRQ  L++ VR   + ++E LA+  DVT QTVRRDV  + +A LL+R+HGGV + +
Sbjct: 1  MTLNPRQSALVEMVRSQGSATIEALARHFDVTLQTVRRDVNLLAEAGLLSRFHGGVRIEA 60

Query: 61 ST-ENIAYPQRQVMNAEAKQRIGKAVAARVPDGCSL 95
          ST ENIAY +RQ ++AEAKQRI +AVA  VPDGCSL
Sbjct: 61 STIENIAYRKRQGLHAEAKQRIARAVAQAVPDGCSL 96