BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0171.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774394.1| sugar ABC transporter permease [Herbaspirill... 533 e-149 ref|YP_003744351.1| ABC transporter permease [Ralstonia solanace... 503 e-140 emb|CCA85411.1| putative ABC transporter permease [Ralstonia syz... 502 e-140 ref|YP_003751126.1| ABC transporter permease [Ralstonia solanace... 502 e-140 ref|ZP_00946854.1| Glycerol transport system permease protein [R... 501 e-140 >ref|YP_003774394.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62486.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 273/296 (92%), Positives = 283/296 (95%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQSVFVGLEWFRAVMRDS 60 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQ VFVGL+WFR VMRD Sbjct: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFREVMRDG 60 Query: 61 ELHSALLRQLIFSFCVLLVQIPLGIGLALSMPAQGWKSSAALVILAMPLLIPWNVVGTIW 120 ELH+ALLRQLIFSFCVLLVQIPLGIGLAL+MP +GWKSSA LVILAMPLLIPWNVVGTIW Sbjct: 61 ELHAALLRQLIFSFCVLLVQIPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRADIGLGGYVLSRLGMDYNYASNSLDAWITVLVMDVWHWTPLVALLAFAGLRSIPD 180 QIFGRADIGLGGYVL+ LG+DYNYASN LDAW+TVL+MDVWHWTPLVALLAFAGLRSIPD Sbjct: 121 QIFGRADIGLGGYVLNLLGIDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 AYYQAAQIDGASRWAVFR+IQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT Sbjct: 181 AYYQAAQIDGASRWAVFRYIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNGGQNTGANHE 296 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGN +G HE Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNHANASGGQHE 296 >ref|YP_003744351.1| ABC transporter permease [Ralstonia solanacearum CFBP2957] emb|CBJ41707.1| putative ABC transporter permease [Ralstonia solanacearum CFBP2957] Length = 296 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/295 (81%), Positives = 269/295 (91%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQSVFVGLEWFRAVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG++WFR ++RDS Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDS 60 Query: 61 ELHSALLRQLIFSFCVLLVQIPLGIGLALSMPAQGWKSSAALVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V+IPLGIGLAL+MP++GWK+SAALV+LAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVVLAMPLLIPWNVVGTIW 120 Query: 121 QIFGRADIGLGGYVLSRLGMDYNYASNSLDAWITVLVMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR+DIGL GY L+R+G+DYNY S+S DAWITVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGVDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNGGQNTGANH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ G +H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRLGSASAAVGDDH 295 >emb|CCA85411.1| putative ABC transporter permease [Ralstonia syzygii R24] Length = 296 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/295 (81%), Positives = 268/295 (90%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQSVFVGLEWFRAVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG++WFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHSALLRQLIFSFCVLLVQIPLGIGLALSMPAQGWKSSAALVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V+IPLGIGLAL+MP++GWK+SAALVILAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRADIGLGGYVLSRLGMDYNYASNSLDAWITVLVMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR+DIGL GY L+R+G+DYNY S+S DAWITVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGIDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNGGQNTGANH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ G +H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAVGDDH 295 >ref|YP_003751126.1| ABC transporter permease [Ralstonia solanacearum PSI07] emb|CBJ49817.1| putative ABC transporter permease [Ralstonia solanacearum PSI07] Length = 296 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/295 (81%), Positives = 268/295 (90%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQSVFVGLEWFRAVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG++WFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHSALLRQLIFSFCVLLVQIPLGIGLALSMPAQGWKSSAALVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V+IPLGIGLAL+MP++GWK+SAALVILAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRADIGLGGYVLSRLGMDYNYASNSLDAWITVLVMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR+DIGL GY L+R+G+DYNY S+S DAWITVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGIDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNGGQNTGANH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ G +H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAMGDDH 295 >ref|ZP_00946854.1| Glycerol transport system permease protein [Ralstonia solanacearum UW551] ref|YP_002260982.1| sugar abc transporter, permease protein [Ralstonia solanacearum IPO1609] gb|EAP70657.1| Glycerol transport system permease protein [Ralstonia solanacearum UW551] emb|CAQ17685.1| sugar abc transporter, permease protein [Ralstonia solanacearum MolK2] emb|CAQ62923.1| sugar abc transporter, permease protein [Ralstonia solanacearum IPO1609] gb|AEG67751.1| sn-glycerol-3-phosphate transmembrane protein [Ralstonia solanacearum Po82] Length = 296 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/295 (81%), Positives = 268/295 (90%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQSVFVGLEWFRAVMRDS 60 MNKP NNKAWF ILPVFL VAFSAI+PLMTVVNYSVQDIISPEQ VFVG++WFR ++RD Sbjct: 1 MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG 60 Query: 61 ELHSALLRQLIFSFCVLLVQIPLGIGLALSMPAQGWKSSAALVILAMPLLIPWNVVGTIW 120 +L AL RQLIFS CVL V+IPLGIGLAL+MP++GWK+SAALV+LAMPLLIPWNVVGTIW Sbjct: 61 DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVVLAMPLLIPWNVVGTIW 120 Query: 121 QIFGRADIGLGGYVLSRLGMDYNYASNSLDAWITVLVMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR+DIGL GY L+R+G+DYNY S+S DAWITVL+MDVWHWTPLVALLA+AGLRSIPD Sbjct: 121 QIFGRSDIGLAGYWLNRMGVDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 A+YQAA+IDGASR AVFR+IQLPKMRGVL+I VLLRFMDSFMIYTEPFVLTGGGPGN+TT Sbjct: 181 AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNGGQNTGANH 295 FLSQYLTQKAVGQFDLGPAAAFS++YFLIILL FVLYNWMQ G+ G +H Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAVGDDH 295