BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0170.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirill... 505 e-141 ref|ZP_07675362.1| sugar ABC transporter, permease protein [Rals... 466 e-129 ref|YP_002982926.1| binding-protein-dependent transport systems ... 466 e-129 ref|YP_001900885.1| binding-protein-dependent transport systems ... 465 e-129 gb|AEG67750.1| sn-glycerol-3-phosphate transmembrane protein [Ra... 462 e-128 >ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62487.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 272 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/272 (90%), Positives = 259/272 (95%) Query: 1 MSKNKQGNWPRMLTLALYIAFTLIPLYWLFNTSLKTNEETLAVFTLWPNQPTLDNYKVIF 60 M+ + + R+L + LYIAFTL+PLYWL NTSLKTNEETL+VFTLWPN PTL+NYK IF Sbjct: 1 MNNTQDKSLTRLLVMLLYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF 60 Query: 61 TDASWYSGYINSIIYVAINTVLSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 120 TD SWYSGYINSIIYVA+NTV+SLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF Sbjct: 61 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 120 Query: 121 LLPFFQLYSTVGLMDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 180 LLPFFQLYST+GL DTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR Sbjct: 121 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 180 Query: 181 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 240 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI Sbjct: 181 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 240 Query: 241 LAAAGVLTIIPGALVIWFVRNHIAKGFAMGRV 272 LAAAGVLTI+PGALVIWFVRNHIAKGFAMGRV Sbjct: 241 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 272 >ref|ZP_07675362.1| sugar ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP66262.1| sugar ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 276 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/271 (82%), Positives = 249/271 (91%) Query: 2 SKNKQGNWPRMLTLALYIAFTLIPLYWLFNTSLKTNEETLAVFTLWPNQPTLDNYKVIFT 61 + Q R +TLA+Y+AF ++PLYW+ + SLKTNEETLA F++WP T DNYK+IFT Sbjct: 6 NNEHQRKIARAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKIIFT 65 Query: 62 DASWYSGYINSIIYVAINTVLSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL 121 D SWY GYINSIIYV +NTVLS +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL Sbjct: 66 DPSWYWGYINSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL 125 Query: 122 LPFFQLYSTVGLMDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRF 181 LPFFQLYSTVGLMDTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP+F Sbjct: 126 LPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPKF 185 Query: 182 FLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGIL 241 FL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG+L Sbjct: 186 FLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWGVL 245 Query: 242 AAAGVLTIIPGALVIWFVRNHIAKGFAMGRV 272 AAAGVLTIIPGALVIWFVRN+IAKGFAMGRV Sbjct: 246 AAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 276 >ref|YP_002982926.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] gb|ACS64254.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] Length = 276 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/271 (82%), Positives = 249/271 (91%) Query: 2 SKNKQGNWPRMLTLALYIAFTLIPLYWLFNTSLKTNEETLAVFTLWPNQPTLDNYKVIFT 61 + Q R +TLA+Y+AF ++PLYW+ + SLKTNEETLA F++WP T DNYK+IFT Sbjct: 6 NNEHQRKIARAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKIIFT 65 Query: 62 DASWYSGYINSIIYVAINTVLSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL 121 D SWY GYINSIIYV +NTVLS +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL Sbjct: 66 DPSWYWGYINSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFL 125 Query: 122 LPFFQLYSTVGLMDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRF 181 LPFFQLYSTVGLMDTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP+F Sbjct: 126 LPFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPKF 185 Query: 182 FLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGIL 241 FL+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG+L Sbjct: 186 FLKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWGVL 245 Query: 242 AAAGVLTIIPGALVIWFVRNHIAKGFAMGRV 272 AAAGVLTIIPGALVIWFVRN+IAKGFAMGRV Sbjct: 246 AAAGVLTIIPGALVIWFVRNYIAKGFAMGRV 276 >ref|YP_001900885.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] gb|ACD28453.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12J] Length = 277 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/262 (85%), Positives = 247/262 (94%) Query: 11 RMLTLALYIAFTLIPLYWLFNTSLKTNEETLAVFTLWPNQPTLDNYKVIFTDASWYSGYI 70 R +TLA+Y+AF ++PLYW+ + SLKTNEETLA F++WP T DNYK+IFTD SWY GYI Sbjct: 16 RAITLAVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKIIFTDPSWYWGYI 75 Query: 71 NSIIYVAINTVLSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYST 130 NSIIYV +NTVLS +VALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYST Sbjct: 76 NSIIYVTMNTVLSTVVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYST 135 Query: 131 VGLMDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFFLRIFLPLI 190 VGLMDTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP+FFL+IFLPLI Sbjct: 136 VGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPKFFLKIFLPLI 195 Query: 191 KSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGILAAAGVLTII 250 K+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG+LAAAGVLTII Sbjct: 196 KAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWGVLAAAGVLTII 255 Query: 251 PGALVIWFVRNHIAKGFAMGRV 272 PGALVIWFVRN+IAKGFAMGRV Sbjct: 256 PGALVIWFVRNYIAKGFAMGRV 277 >gb|AEG67750.1| sn-glycerol-3-phosphate transmembrane protein [Ralstonia solanacearum Po82] Length = 281 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/270 (82%), Positives = 247/270 (91%) Query: 3 KNKQGNWPRMLTLALYIAFTLIPLYWLFNTSLKTNEETLAVFTLWPNQPTLDNYKVIFTD 62 +Q R +TL +Y+AF ++PLYW+ + SLKTNEETLA F++WP T DNYK+IFTD Sbjct: 12 SERQRKIARAITLIVYVAFAVLPLYWMLSMSLKTNEETLAGFSIWPKLVTFDNYKIIFTD 71 Query: 63 ASWYSGYINSIIYVAINTVLSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLL 122 SWY GYINSI+YV INTVLS +VALPAAYAFSRYRFLGDKH+FFWLLTNRMTPPAVFLL Sbjct: 72 PSWYWGYINSILYVTINTVLSTVVALPAAYAFSRYRFLGDKHLFFWLLTNRMTPPAVFLL 131 Query: 123 PFFQLYSTVGLMDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFF 182 PFFQLYSTVGLMDTH+ VALAHMLFNVPLAVWILEGFMSG+PREIDETAYIDG+SFP FF Sbjct: 132 PFFQLYSTVGLMDTHLGVALAHMLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPAFF 191 Query: 183 LRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGILA 242 L+IFLPLIK+GVGVTAFFCFMFSWVELLLARTLTSV+AKPI+A+MTRT SA+GMDWG+LA Sbjct: 192 LKIFLPLIKAGVGVTAFFCFMFSWVELLLARTLTSVDAKPITAVMTRTVSASGMDWGVLA 251 Query: 243 AAGVLTIIPGALVIWFVRNHIAKGFAMGRV 272 AAGVLTIIPGALVIWFVRN+IAKGFAMGRV Sbjct: 252 AAGVLTIIPGALVIWFVRNYIAKGFAMGRV 281