BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0169.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774396.1| integral transmembrane protein [Herbaspirill...   159   2e-37
ref|YP_984716.1| putative integral membrane protein [Acidovorax ...   123   7e-27
ref|NP_521171.1| hypothetical protein RSc3050 [Ralstonia solanac...   120   5e-26
ref|ZP_08274035.1| putative transmembrane protein [Oxalobacterac...   119   1e-25
ref|YP_004490818.1| hypothetical protein DelCs14_5493 [Delftia s...   119   2e-25

>ref|YP_003774396.1| integral transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62488.1| integral transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 82/91 (90%)

Query: 3  AFSWMSWTPPIAVFFICIALMLVGMTIWEIRSPTLERKGFLPLRTTRGDRLFIGLLSAAY 62
          A SWMSWTPP+A+FF+C+ LMLVGMT+WEIRSPT+ERKGFLP+RTTRGDRLFIGLL+AAY
Sbjct: 4  ALSWMSWTPPVAIFFVCVVLMLVGMTVWEIRSPTIERKGFLPMRTTRGDRLFIGLLTAAY 63

Query: 63 INLAWVAVTDLDQWYAAVLGLAALFIVMRKG 93
          INLAWV +TD DQWYA  LG  AL ++MRKG
Sbjct: 64 INLAWVGLTDKDQWYAVALGFVALVLIMRKG 94


>ref|YP_984716.1| putative integral membrane protein [Acidovorax sp. JS42]
 ref|YP_002551864.1| integral membrane protein [Acidovorax ebreus TPSY]
 gb|ABM40640.1| putative integral membrane protein [Acidovorax sp. JS42]
 gb|ACM31864.1| putative integral membrane protein [Acidovorax ebreus TPSY]
          Length = 102

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 77/101 (76%), Gaps = 11/101 (10%)

Query: 4   FSWMSWTPPIAVFFICIALMLVGMTIWEIRSPTLERKGFLPLRTTRGDRLFIGLLSAAYI 63
           F WM+WT P+AVFF CI LML+GMT+WEI+SPT+ERKGFLP+ TTRGDRLFIGLL+AAYI
Sbjct: 2   FDWMAWTTPVAVFFTCIVLMLIGMTVWEIQSPTVERKGFLPMTTTRGDRLFIGLLTAAYI 61

Query: 64  NLAWVAVTD-LDQWYAA----------VLGLAALFIVMRKG 93
           NLAWV + + + QW++           VL +  L +V+RKG
Sbjct: 62  NLAWVGLGEKMAQWFSLEAEPSVWISFVLSMLVLALVLRKG 102


>ref|NP_521171.1| hypothetical protein RSc3050 [Ralstonia solanacearum GMI1000]
 emb|CAD16759.1| probable transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 93

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 4  FSWMSWTPPIAVFFICIALMLVGMTIWEIRSPTLERKGFLPLRTTRGDRLFIGLLSAAYI 63
          FSWM+WTP +A+FF CIALML GMT+WE+  PT+ERKGFLP+ TTRGDRLFIGLL+AAYI
Sbjct: 2  FSWMAWTPEVAIFFGCIALMLAGMTVWEVARPTVERKGFLPIATTRGDRLFIGLLTAAYI 61

Query: 64 NLAWVAVTDLDQ--WYAAVLGLAALFIVMRKG 93
          NLAWV +   D   W   +  +A L ++M +G
Sbjct: 62 NLAWVGLASEDSGAWSGFIASMAVLLLIMWRG 93


>ref|ZP_08274035.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32499.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 87

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 67/87 (77%)

Query: 7  MSWTPPIAVFFICIALMLVGMTIWEIRSPTLERKGFLPLRTTRGDRLFIGLLSAAYINLA 66
          M WT P+A+FF+ + LML GMTIWE++SPT+ERKGF+P+ TTRGDRLFIGLL+AAYINL 
Sbjct: 1  MEWTTPVAIFFVSVGLMLAGMTIWELKSPTIERKGFIPMITTRGDRLFIGLLTAAYINLG 60

Query: 67 WVAVTDLDQWYAAVLGLAALFIVMRKG 93
          W A+T   QW   VL    L IVMR G
Sbjct: 61 WTALTTGAQWPGTVLSFIVLLIVMRWG 87


>ref|YP_004490818.1| hypothetical protein DelCs14_5493 [Delftia sp. Cs1-4]
 gb|AEF92463.1| Protein of unknown function DUF2160, transmembrane [Delftia sp.
           Cs1-4]
          Length = 102

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 76/101 (75%), Gaps = 11/101 (10%)

Query: 4   FSWMSWTPPIAVFFICIALMLVGMTIWEIRSPTLERKGFLPLRTTRGDRLFIGLLSAAYI 63
           FSWM+WT P+AVFF CI LMLVGMT+WE+RSPTL RKG+LP+ TTRGDRLFIGLL AAY+
Sbjct: 2   FSWMAWTLPVAVFFSCIVLMLVGMTLWELRSPTLMRKGWLPMATTRGDRLFIGLLLAAYV 61

Query: 64  NLAWVAVTD-LDQWY----------AAVLGLAALFIVMRKG 93
           NLAWV + + + QW+          + VL +  L +VMRKG
Sbjct: 62  NLAWVGLGERMVQWFSLEAEPSVWISLVLSMLVLAVVMRKG 102