BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0164.p         (206 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751104.1| diaminopimelate decarboxylase [Collimonas fu...   360   5e-98
ref|YP_003773625.1| diaminopimelate decarboxylase [Herbaspirillu...   352   1e-95
ref|YP_001355061.1| diaminopimelate decarboxylase [Janthinobacte...   347   6e-94
ref|YP_001101359.1| diaminopimelate decarboxylase [Herminiimonas...   340   1e-91
ref|ZP_08274530.1| Diaminopimelate decarboxylase [Oxalobacterace...   313   1e-83

>ref|YP_004751104.1| diaminopimelate decarboxylase [Collimonas fungivorans Ter331]
 gb|AEK60281.1| Diaminopimelate decarboxylase [Collimonas fungivorans Ter331]
          Length = 428

 Score =  360 bits (925), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 183/204 (89%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +IEL+DQL +EGI +HHLDIGGGIGITYDDEQPV +GDYLGRLF RI+AWR+EKY G  I
Sbjct: 222 LIELVDQLASEGIHLHHLDIGGGIGITYDDEQPVVIGDYLGRLFARINAWREEKYQGAPI 281

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           KVMFEPGRSIVGNAG+L+TEVQYLKH E+KNFAVVDAAMNDLMRPALYEAWHGVQ V QR
Sbjct: 282 KVMFEPGRSIVGNAGILLTEVQYLKHSEAKNFAVVDAAMNDLMRPALYEAWHGVQTVSQR 341

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
             A + YDVVGPVCESGDWLAR R LAI  GDLLALMSAGAYGMTM+SNYNTRGRAAEV+
Sbjct: 342 STAPQVYDVVGPVCESGDWLARCRSLAIEAGDLLALMSAGAYGMTMSSNYNTRGRAAEVM 401

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDG Q HLIR+RENPADLF LES+
Sbjct: 402 VDGTQVHLIRQRENPADLFTLESL 425


>ref|YP_003773625.1| diaminopimelate decarboxylase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61717.1| diaminopimelate decarboxylase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 430

 Score =  352 bits (904), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 182/204 (89%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +I+++D LEAEGI IHHLDIGGGIGI YDDEQPV +GDYL R+F R+DAWR  KY GR I
Sbjct: 225 IIDMVDALEAEGIPIHHLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRASKYQGRPI 284

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           +VMFEPGRS+VGNAG+L+TEVQYLKHGE KNFAVVDAAMNDLMRPA+YEAWHGV+ V++ 
Sbjct: 285 QVMFEPGRSVVGNAGLLLTEVQYLKHGEGKNFAVVDAAMNDLMRPAMYEAWHGVKTVKEN 344

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
               R YDVVGPVCESGDWLARSRELAI  GDLLALMSAGAYGMTMASNYNTRGRAAEVL
Sbjct: 345 AGQPRIYDVVGPVCESGDWLARSRELAIGEGDLLALMSAGAYGMTMASNYNTRGRAAEVL 404

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDG++AHLIR RENPADLFALE I
Sbjct: 405 VDGERAHLIRARENPADLFALEKI 428


>ref|YP_001355061.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille]
 gb|ABR88379.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille]
          Length = 427

 Score =  347 bits (890), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 162/204 (79%), Positives = 184/204 (90%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +IELID L+AEGI +HHLDIGGGIGI YD++QPV VGDYL RLF +IDAWRK+K+ G  I
Sbjct: 222 LIELIDTLDAEGIHLHHLDIGGGIGINYDNDQPVAVGDYLARLFAKIDAWRKQKHGGAPI 281

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           KV+FEPGRSIVGNAG+L+TEVQY+KHGE+KNFA+VDAAMNDLMRPA+YEAWHGV  V+Q 
Sbjct: 282 KVLFEPGRSIVGNAGILLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVLPVKQS 341

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
             AA TYDVVGPVCESGDWLARSRELAI  GDLLA+MSAGAYGMTM+SNYNTRGRAAEV+
Sbjct: 342 TAAAATYDVVGPVCESGDWLARSRELAIEEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVM 401

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDGD+ HLIRKRE  +DLFALES+
Sbjct: 402 VDGDKVHLIRKREAASDLFALESL 425


>ref|YP_001101359.1| diaminopimelate decarboxylase [Herminiimonas arsenicoxydans]
 emb|CAL63238.1| Diaminopimelate decarboxylase (DAP decarboxylase) [Herminiimonas
           arsenicoxydans]
          Length = 427

 Score =  340 bits (871), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 182/204 (89%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +IELID L AEGI IHHLDIGGGIGI YD+++PV VGDYL R+F ++DAWR + +AG  I
Sbjct: 222 LIELIDALAAEGIVIHHLDIGGGIGINYDNDKPVAVGDYLARVFAKVDAWRAKNHAGAPI 281

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           KV+FEPGRSIVGNAG+L+TEVQY+KHGE+KNFA+VDAAMNDLMRPA+YEAWHGVQ V QR
Sbjct: 282 KVLFEPGRSIVGNAGILLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVQPVLQR 341

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
             AA+TYDVVGPVCESGDWLARSRELAI  GDLLA+MSAGAYGMTM+SNYNTRGRAAEV+
Sbjct: 342 HVAAQTYDVVGPVCESGDWLARSRELAIQEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVM 401

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDG   HLIRKRE  +DLFALE++
Sbjct: 402 VDGATVHLIRKRELASDLFALETL 425


>ref|ZP_08274530.1| Diaminopimelate decarboxylase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31991.1| Diaminopimelate decarboxylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 368

 Score =  313 bits (801), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 170/204 (83%)

Query: 1   VIELIDQLEAEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFTRIDAWRKEKYAGRAI 60
           +IELID L AEGI IHHLDIGGG+GI Y+ E PV VGDYL RLF +ID WR EKY G  I
Sbjct: 163 LIELIDVLAAEGIVIHHLDIGGGLGIDYEAEVPVAVGDYLTRLFRKIDLWRAEKYQGVPI 222

Query: 61  KVMFEPGRSIVGNAGVLVTEVQYLKHGESKNFAVVDAAMNDLMRPALYEAWHGVQVVQQR 120
           KV+FEPGRSIVGNAGVL+T V+YLK G  KNFA+VDAAMNDLMRPA+Y+AWHGVQ V QR
Sbjct: 223 KVLFEPGRSIVGNAGVLLTRVEYLKPGSEKNFAIVDAAMNDLMRPAMYQAWHGVQAVVQR 282

Query: 121 KDAARTYDVVGPVCESGDWLARSRELAIAPGDLLALMSAGAYGMTMASNYNTRGRAAEVL 180
              A  +DVVGPVCESGDWLAR+R L++  GDLLA+ SAGAYGMTM+SNYNTRGRAAEV+
Sbjct: 283 GGEAIVWDVVGPVCESGDWLARARTLSLEEGDLLAIHSAGAYGMTMSSNYNTRGRAAEVM 342

Query: 181 VDGDQAHLIRKRENPADLFALESI 204
           VDG+ +HLIR+RE P  LFALE I
Sbjct: 343 VDGNVSHLIRQRETPEQLFALEKI 366