BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0144.p         (57 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774627.1| hypothetical protein Hsero_1202 [Herbaspiril...    75   2e-12
ref|YP_004235277.1| CsbD family protein [Acidovorax avenae subsp...    75   5e-12
ref|YP_001564494.1| CsbD family protein [Delftia acidovorans SPH...    74   9e-12
ref|YP_970761.1| CsbD family protein [Acidovorax citrulli AAC00-...    74   1e-11
ref|YP_412295.1| CsbD-like protein [Nitrosospira multiformis ATC...    70   1e-10

>ref|YP_003774627.1| hypothetical protein Hsero_1202 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62719.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 56

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 1  MNKDQVQGKAKEVAGKVQQKAGEMVDSKEQQVKGAAKQIDGNVQESYGDVKEALKD 56
          MNKDQV+G  KE AGKVQ+K GE+  +K Q++KGAA+Q++GNVQ++YGD KEA KD
Sbjct: 1  MNKDQVKGSLKEAAGKVQEKTGELTGNKSQELKGAARQVEGNVQKTYGDAKEAAKD 56


>ref|YP_004235277.1| CsbD family protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gb|ADX46710.1| CsbD family protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 59

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%)

Query: 1  MNKDQVQGKAKEVAGKVQQKAGEMVDSKEQQVKGAAKQIDGNVQESYGDVKEALKD 56
          MN DQ++G  KE AGKVQQK GE+ +S EQQ KG AKQ++GNVQ++YGD KE +KD
Sbjct: 1  MNTDQIKGTLKEAAGKVQQKTGEVFNSPEQQAKGMAKQVEGNVQKNYGDAKENIKD 56


>ref|YP_001564494.1| CsbD family protein [Delftia acidovorans SPH-1]
 ref|YP_004488699.1| CsbD family protein [Delftia sp. Cs1-4]
 gb|ABX36109.1| CsbD family protein [Delftia acidovorans SPH-1]
 gb|EEE72652.1| predicted protein [Populus trichocarpa]
 gb|AEF90344.1| CsbD family protein [Delftia sp. Cs1-4]
          Length = 59

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 44/56 (78%)

Query: 1  MNKDQVQGKAKEVAGKVQQKAGEMVDSKEQQVKGAAKQIDGNVQESYGDVKEALKD 56
          MN DQ++G  K+ AGKVQQKAGE++DS EQQ KG AKQ++G  Q+  GDVKE LKD
Sbjct: 1  MNTDQIKGTLKDAAGKVQQKAGELIDSPEQQAKGIAKQVEGTAQKKLGDVKEVLKD 56


>ref|YP_970761.1| CsbD family protein [Acidovorax citrulli AAC00-1]
 gb|ABM32987.1| CsbD family protein [Acidovorax citrulli AAC00-1]
          Length = 59

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 1  MNKDQVQGKAKEVAGKVQQKAGEMVDSKEQQVKGAAKQIDGNVQESYGDVKEALKD 56
          MN DQ++G  KE AGKVQQK GE+ +S E Q KG AKQ++GNVQ++YGD KE +KD
Sbjct: 1  MNTDQIKGSLKEAAGKVQQKTGEVFNSPEHQAKGMAKQVEGNVQKNYGDAKENIKD 56


>ref|YP_412295.1| CsbD-like protein [Nitrosospira multiformis ATCC 25196]
 gb|ABB74903.1| CsbD-like protein [Nitrosospira multiformis ATCC 25196]
          Length = 61

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 1  MNKDQVQGKAKEVAGKVQQKAGEMVDSKEQQVKGAAKQIDGNVQESYGDVKEALKD 56
          MNKDQV+G AK++AGKVQQ+ GE+   KEQQ KG AKQ +G +Q+ +GD KEA+KD
Sbjct: 1  MNKDQVKGAAKDIAGKVQQEVGELTGDKEQQAKGLAKQAEGKIQKGFGDAKEAVKD 56