BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0138.p         (259 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752762.1| hypothetical protein CFU_2109 [Collimonas fu...   268   6e-70
ref|YP_004156586.1| hypothetical protein Varpa_4306 [Variovorax ...   251   8e-65
ref|YP_002945612.1| hypothetical protein Vapar_3730 [Variovorax ...   219   3e-55

>ref|YP_004752762.1| hypothetical protein CFU_2109 [Collimonas fungivorans Ter331]
 gb|AEK61939.1| hypothetical protein CFU_2109 [Collimonas fungivorans Ter331]
          Length = 326

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 135/244 (55%), Positives = 173/244 (70%), Gaps = 5/244 (2%)

Query: 18  SPALDRFSLSAGAYYVDPTFRVNANSHYGSYQSGDIDRDRTALPRVRAELLLFDSQGLSF 77
           SPALDRFSLS G YYV+PTF +  N+ YG  ++GD+ RD   L RVRA++LL D QGL+F
Sbjct: 86  SPALDRFSLSVGGYYVEPTFNIGVNTKYGRAETGDLTRDHKTLGRVRADMLLGDHQGLAF 145

Query: 78  DYFTYKKNYGGAINRTIPVGTGSTLNGNGDAN--IQVDMASLAYKWWIGQGNDVFGIGLG 135
           DY+ Y  N+  +I RT  V  G  + G+  AN  ++V++A LAYKWW G GN VFG+G G
Sbjct: 146 DYYRYTNNFDASIARTATV-NGQVVTGDASANARLKVELAQLAYKWWFGSGNTVFGLGAG 204

Query: 136 AGYYRAKIDVNAAATLNGAAGTFSDSYSEKTWAPLLEVGWKHAFSKDLRLYAEASGVKKN 195
           A YY+A +D  A  +L+G +GT SDS S+   APLLEVG + A S ++RLYAEASG+KKN
Sbjct: 205 AAYYQADLDTMARGSLDGVSGTASDSRSDNAIAPLLEVGVRTALSDNVRLYAEASGIKKN 264

Query: 196 WGRVTGHIYGAAVGAEWYPLANLGIGADYGITRIKINRDGGGAIDDANLDIRLKGPSAYV 255
            G + GHIY   VG EW+P  N+GIGADYGIT+I++ RD   A   ANL ++L GPSAY+
Sbjct: 265 GGNINGHIYNGNVGVEWFPFKNVGIGADYGITKIQLYRD--SANYQANLGVKLVGPSAYL 322

Query: 256 KVRF 259
           KVRF
Sbjct: 323 KVRF 326


>ref|YP_004156586.1| hypothetical protein Varpa_4306 [Variovorax paradoxus EPS]
 gb|ADU38475.1| hypothetical protein Varpa_4306 [Variovorax paradoxus EPS]
          Length = 279

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 125/245 (51%), Positives = 168/245 (68%), Gaps = 6/245 (2%)

Query: 18  SPALDRFSLSAGAYYVDPTFRVNANSHYGSYQSGDIDRDRTALPRVRAELLLFDSQGLSF 77
           SPALDRFSLS G +  DP    +  + YG+ Q+GDI   R  +PR+ A+LLL DSQG+SF
Sbjct: 38  SPALDRFSLSVGGFNADPKLEASVATPYGTLQTGDIKPGRVTMPRITADLLLGDSQGISF 97

Query: 78  DYFTYKKNYGGAINRTI---PVGTGSTLNGNGDANIQVDMASLAYKWWIGQGNDVFGIGL 134
           DY+ YK++YGG         P GT STL GN + N ++D A L+YKWW+G GN VFG+G 
Sbjct: 98  DYYQYKRDYGGQFGNNTSLGPFGTLSTL-GNANLNTKLDFAKLSYKWWLGSGNTVFGLGA 156

Query: 135 GAGYYRAKIDVNAAATLNGAAGTFSDSYSEKTWAPLLEVGWKHAFSKDLRLYAEASGVKK 194
           GA YYRA + + A A +NG  GT ++S S+   APLLE+G +HA + DLRL+A+ASGV K
Sbjct: 157 GAAYYRATLGITALAGVNGQVGTLNESSSDNAVAPLLEIGVRHAITPDLRLFADASGVWK 216

Query: 195 NWGRVTGHIYGAAVGAEWYPLANLGIGADYGITRIKINRDGGGAIDDANLDIRLKGPSAY 254
           + GR  G+IY A+ G EW+P+ N+G+   YG+T I + RDG  A  D+ L +RL+GPSA+
Sbjct: 217 SSGRFHGNIYNASAGVEWFPVKNVGLVVSYGVTNIDLTRDGSTA--DSRLKVRLQGPSAF 274

Query: 255 VKVRF 259
           +K RF
Sbjct: 275 LKARF 279


>ref|YP_002945612.1| hypothetical protein Vapar_3730 [Variovorax paradoxus S110]
 gb|ACS20346.1| hypothetical protein Vapar_3730 [Variovorax paradoxus S110]
          Length = 279

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/244 (44%), Positives = 158/244 (64%), Gaps = 4/244 (1%)

Query: 18  SPALDRFSLSAGAYYVDPTFRVNANSHYGSYQSGDIDRDRTALPRVRAELLLFDSQGLSF 77
           SPALDRFS SAGA+  DP F  + +S YG+ ++ D++  R  +PR+ A+LL+ DS GLSF
Sbjct: 38  SPALDRFSFSAGAFSADPKFNASVSSPYGALRTRDLEPGRVTMPRITADLLIGDSHGLSF 97

Query: 78  DYFTYKKNYGGAINRTIPVGTGSTLN--GNGDANIQVDMASLAYKWWIGQGNDVFGIGLG 135
           DY+ YK++Y G    +   G   T +  GN + N+++D A L+YKWW+G GN VFG+G G
Sbjct: 98  DYYRYKRDYFGQAAGSDSFGGFGTFSAVGNANINVKLDFAKLSYKWWLGSGNTVFGLGAG 157

Query: 136 AGYYRAKIDVNAAATLNGAAGTFSDSYSEKTWAPLLEVGWKHAFSKDLRLYAEASGVKKN 195
           A YY   +  NA   +NG   T ++  S+   APLLE+G +HA + DLRL+A+ SGV+K 
Sbjct: 158 AAYYSIDVGTNANVAVNGRIRTLNEDASDNAVAPLLELGVRHAINPDLRLFADLSGVRKG 217

Query: 196 WGRVTGHIYGAAVGAEWYPLANLGIGADYGITRIKINRDGGGAIDDANLDIRLKGPSAYV 255
            GR  G+IY A+ G EW+P+ N+G+   YG+T I + R    A  +  + ++L GPSA++
Sbjct: 218 GGRFHGNIYNASAGVEWFPVKNVGLVLAYGVTNIDLARQSSTA--ETRVKVKLHGPSAFL 275

Query: 256 KVRF 259
           K RF
Sbjct: 276 KARF 279