BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0134.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754620.1| nitrate ABC transporter permease [Collimonas... 429 e-118 ref|ZP_08274285.1| Nitrate ABC transporter, permease protein [Ox... 424 e-117 ref|YP_001352171.1| ABC-type nitrate transport system, permease ... 420 e-115 ref|YP_001098776.1| nitrate ABC transporter permease [Herminiimo... 411 e-113 ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum... 400 e-109 >ref|YP_004754620.1| nitrate ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK63797.1| Nitrate ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 302 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 245/304 (80%), Positives = 265/304 (87%), Gaps = 6/304 (1%) Query: 1 MSAVMDTMMNDKPAPATAE---VAIPAAVAVP-KVKKTKAARRNLPFAGWLMKILPPVTG 56 MSA+MDT N AT + PA P + KT R ++P WLM+I+ P+ G Sbjct: 1 MSAIMDTAANANRQAATMDNNPAEAPAVTIAPLPLPKTGNRRSSMP--SWLMQIIAPLLG 58 Query: 57 LAFLVLVWQIVAAKTGNFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVAIG 116 LAFLVLVWQI+A FPTPL+TLQEA+KLF+DPFYRT PNDQGIGWN+LASLQRV +G Sbjct: 59 LAFLVLVWQIIAMNNSQFPTPLLTLQEALKLFADPFYRTSPNDQGIGWNILASLQRVGVG 118 Query: 117 FGMAALVGIPLGFMIGRVRFLSGMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWSIF 176 FG+AALVGIPLGFMIGR RFLS MFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWSIF Sbjct: 119 FGLAALVGIPLGFMIGRFRFLSSMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWSIF 178 Query: 177 ICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKILTKILFPSVLPYMLTGVRLAIGTA 236 ICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKI+TKILFPSVLPYMLTGVRLAIGTA Sbjct: 179 ICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIITKILFPSVLPYMLTGVRLAIGTA 238 Query: 237 WLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAFTYE 296 WLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL+LEQLLVALAKAFTYE Sbjct: 239 WLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLLLEQLLVALAKAFTYE 298 Query: 297 EVSS 300 +V++ Sbjct: 299 QVAN 302 >ref|ZP_08274285.1| Nitrate ABC transporter, permease protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32258.1| Nitrate ABC transporter, permease protein [Oxalobacteraceae bacterium IMCC9480] Length = 307 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 236/307 (76%), Positives = 262/307 (85%), Gaps = 7/307 (2%) Query: 1 MSAVMDTMMN--DKPAPATAEVAIPAAVAVPKVKKT-----KAARRNLPFAGWLMKILPP 53 MSAV+DT+ + D+P P A+P + + + RR P ++M LPP Sbjct: 1 MSAVIDTLNHASDEPVPPVTANALPVTAESQRRRAVGADVPRTVRRKSPLTPYVMAGLPP 60 Query: 54 VTGLAFLVLVWQIVAAKTGNFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRV 113 + GLA LVL+WQIVAA+ FPTP+VTL EAIKLFSDPFYR GPNDQGIGWN+LASL+RV Sbjct: 61 LVGLALLVLLWQIVAARNSGFPTPMVTLTEAIKLFSDPFYRNGPNDQGIGWNILASLKRV 120 Query: 114 AIGFGMAALVGIPLGFMIGRVRFLSGMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIW 173 +GFG+AA+VGIPLGF IGR +F+SGMFGPIISLLKPVSPLAWLPIGLLVFK+A+PAAIW Sbjct: 121 GMGFGLAAVVGIPLGFAIGRFKFMSGMFGPIISLLKPVSPLAWLPIGLLVFKAADPAAIW 180 Query: 174 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKILTKILFPSVLPYMLTGVRLAI 233 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWK+LTKILFPSVLPYMLTGVRLAI Sbjct: 181 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLAI 240 Query: 234 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAF 293 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQ LVALA+AF Sbjct: 241 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQALVALARAF 300 Query: 294 TYEEVSS 300 TYE+ S Sbjct: 301 TYEDAGS 307 >ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89982.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/294 (76%), Positives = 254/294 (86%), Gaps = 6/294 (2%) Query: 7 TMMNDKPAPATAEVAIPAAVAVPKVKKTKAARRNLPFAGWLMKILPPVTGLAFLVLVWQI 66 +M ++ PA A VA PKVK ++R PF L+ +LPP+ G+ FL+LVW+I Sbjct: 22 SMRSEVAGPADAAVAKATPAVAPKVKAKWSSR---PF---LLAVLPPIFGMVFLILVWEI 75 Query: 67 VAAKTGNFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVAIGFGMAALVGIP 126 ++AK+ P+PLVT Q A LF+DPFY GPNDQGIGWN+LASL+RV +GFGMAALVGIP Sbjct: 76 ISAKSSGIPSPLVTFQSAQALFADPFYSNGPNDQGIGWNILASLKRVGMGFGMAALVGIP 135 Query: 127 LGFMIGRVRFLSGMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIIN 186 LGFMIGR +FLSGMF PIISLLKPVSPLAWLPIGLLVFK+A+PAAIWSIFICSIWPMIIN Sbjct: 136 LGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIIN 195 Query: 187 TAVGVQRVPQDYMNVARVLNLSEWKILTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEML 246 TAVGVQRVPQDYMNVA+VL LSEWKI+TKILFPSVLPYMLTGVRLAIGTAWLVIVAAEML Sbjct: 196 TAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEML 255 Query: 247 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAFTYEEVSS 300 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQ+LV +A+AFTYE+V S Sbjct: 256 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQILVGIARAFTYEDVKS 309 >ref|YP_001098776.1| nitrate ABC transporter permease [Herminiimonas arsenicoxydans] emb|CAL60647.1| Nitrate transport permease protein nrtB [Herminiimonas arsenicoxydans] Length = 304 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/306 (72%), Positives = 256/306 (83%), Gaps = 8/306 (2%) Query: 1 MSAVMDTMMNDKPAPATAEVAIPAAVAVPKVKKTKAARRNLPFAG------WLMKILPPV 54 MSA+M + N P T + + +VA + T A + AG + M ++PP+ Sbjct: 1 MSAIMHVVEN-APVSTTTDAKVSDSVA-KSIGATPVADKPATRAGMFSLRPFFMSVVPPI 58 Query: 55 TGLAFLVLVWQIVAAKTGNFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVA 114 G+ FLVLVW+I++AK P+P VTL+ AI LF+DPFY GPNDQGIGWN+LASL+RVA Sbjct: 59 FGVLFLVLVWEIISAKNSGIPSPAVTLKSAIDLFADPFYSNGPNDQGIGWNILASLKRVA 118 Query: 115 IGFGMAALVGIPLGFMIGRVRFLSGMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWS 174 +GFG+AALVGIPLGFMIGR +FLSGMF PIISLLKPVSPLAWLPIGLLVFK+A+PAAIWS Sbjct: 119 VGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWS 178 Query: 175 IFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKILTKILFPSVLPYMLTGVRLAIG 234 IFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKI+TKILFPSVLPYMLTGVRLAIG Sbjct: 179 IFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVRLAIG 238 Query: 235 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAFT 294 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNV HIIIAIVVIG+VGL+LEQ+LV +A+ FT Sbjct: 239 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVAHIIIAIVVIGIVGLVLEQILVGIARVFT 298 Query: 295 YEEVSS 300 YE+V + Sbjct: 299 YEDVKN 304 >ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62725.1| ABC-type nitrate transporter, permease component protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 233/307 (75%), Positives = 261/307 (85%), Gaps = 7/307 (2%) Query: 1 MSAVMDTMMNDKPAPATAEVAIPAAVAVPKVKKT-------KAARRNLPFAGWLMKILPP 53 MSAV++++M + PA + P A + + + A++ L G M++ PP Sbjct: 1 MSAVVESIMGENAKPAGPAGSHPPAAVNSQAPASPPAAIPARRAKKRLASGGLFMRVAPP 60 Query: 54 VTGLAFLVLVWQIVAAKTGNFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRV 113 + GLA LVLVWQI+A KT +FPTP VTL+EA +F+DPFYR PNDQGIGWNVLASLQRV Sbjct: 61 LLGLALLVLVWQIIALKTSSFPTPWVTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRV 120 Query: 114 AIGFGMAALVGIPLGFMIGRVRFLSGMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIW 173 GFG+AALVGIPLGF IGRV FL+ MFGPIISLL+PVSPLAWLPIGLLVFKSANPAAIW Sbjct: 121 GTGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIW 180 Query: 174 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKILTKILFPSVLPYMLTGVRLAI 233 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWK+LTKILFPSVLPYMLTGVRL+I Sbjct: 181 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSI 240 Query: 234 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAF 293 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL+LEQLLVALAKAF Sbjct: 241 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAF 300 Query: 294 TYEEVSS 300 TYE+V++ Sbjct: 301 TYEQVNN 307