BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0132.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774635.1| methyl-accepting chemotaxis protein [Herbasp... 319 2e-85 ref|YP_001022488.1| methyl-accepting chemotaxis protein [Methyli... 250 1e-64 ref|YP_003048277.1| methyl-accepting chemotaxis sensory transduc... 237 1e-60 ref|YP_001790196.1| methyl-accepting chemotaxis sensory transduc... 219 2e-55 ref|YP_003674445.1| methyl-accepting chemotaxis sensory transduc... 206 2e-51 >ref|YP_003774635.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62727.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 157/207 (75%), Positives = 179/207 (86%) Query: 24 PLSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRGS 83 PLSGEVFGALINLSGRRRFTSQRLVLYAVLA+QG GA TAREALALFR AH+AL++ S Sbjct: 22 PLSGEVFGALINLSGRRRFTSQRLVLYAVLAAQGQAGACSTAREALALFRSAHSALLKRS 81 Query: 84 DTVPGIFCEEVREAYFGKLAGDAQIVYFMNLAERTLNAIEDRLRDAPALLEELVRITTPL 143 +PG+FC E+ E YFG+ GDA+I F LA+RTLNAIEDRL+ AP LL ELV+ TTPL Sbjct: 82 GDLPGVFCPELEEVYFGRRGGDARITAFAELAQRTLNAIEDRLKSAPTLLAELVQETTPL 141 Query: 144 LGVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAGQAGKE 203 L VLN+IT VYE QSK+HA LM+ QLRGIMTDIETIA++AKMV+FNARIVAAR+GQAGKE Sbjct: 142 LAVLNEITAVYEAQSKKHAQLMRHQLRGIMTDIETIAREAKMVAFNARIVAARSGQAGKE 201 Query: 204 FSVVAGVLSNITTEIDDLVRAALSGAA 230 FSVVAGVLS+IT EID+LV+ ALSGAA Sbjct: 202 FSVVAGVLSSITGEIDELVKQALSGAA 228 >ref|YP_001022488.1| methyl-accepting chemotaxis protein [Methylibium petroleiphilum PM1] gb|ABM96253.1| methyl-accepting chemotaxis protein [Methylibium petroleiphilum PM1] Length = 233 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/207 (59%), Positives = 160/207 (77%) Query: 25 LSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRGSD 84 LSGEV+G LINLSGRRRFTSQR+VLYAVLA+QG DGA+ + EALA+FR AH ALV G D Sbjct: 27 LSGEVYGTLINLSGRRRFTSQRVVLYAVLATQGRDGALAMSAEALAVFRAAHAALVDGDD 86 Query: 85 TVPGIFCEEVREAYFGKLAGDAQIVYFMNLAERTLNAIEDRLRDAPALLEELVRITTPLL 144 T+PG++C+E+R+AYFG + D I F+ LAER L AI R R LLE+LV TPLL Sbjct: 87 TLPGLYCDELRDAYFGAIGADRVIRAFIALAERVLEAIPLRTRAVAGLLEQLVESATPLL 146 Query: 145 GVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAGQAGKEF 204 VLN++T VYE+ +KR A +KKQL G+M +IETIAKQA++VSFNA+++AARAG +G+EF Sbjct: 147 AVLNRVTQVYEDLAKRQASTVKKQLMGVMGEIETIAKQARIVSFNAQVIAARAGDSGREF 206 Query: 205 SVVAGVLSNITTEIDDLVRAALSGAAA 231 +VV+ L+ IT ++D LVR A+ + A Sbjct: 207 AVVSAELTQITGKLDGLVREAMRSSVA 233 >ref|YP_003048277.1| methyl-accepting chemotaxis sensory transducer [Methylotenera mobilis JLW8] gb|ACT47750.1| methyl-accepting chemotaxis sensory transducer [Methylotenera mobilis JLW8] Length = 234 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 160/206 (77%) Query: 25 LSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRGSD 84 +S E FGALINL+GR+R SQR+VL AVL++ GH+ A++TAREALALFR +H ALV G+ Sbjct: 28 VSTETFGALINLAGRQRMLSQRIVLNAVLSTMGHESALETAREALALFRVSHAALVHGNS 87 Query: 85 TVPGIFCEEVREAYFGKLAGDAQIVYFMNLAERTLNAIEDRLRDAPALLEELVRITTPLL 144 +PG+F EE+R YFG++ D +I F++L E+T++A E + R AP LL EL + TP++ Sbjct: 88 ELPGVFFEELRLVYFGEIEADRKITEFISLVEKTISACESKFRTAPDLLSELGQQATPIV 147 Query: 145 GVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAGQAGKEF 204 +LN++T VYEE+SK+HA + +KQ +M+ I+ IAKQA++VS NA+IVAARAG+ G+EF Sbjct: 148 ALLNRVTVVYEEESKKHAKVQRKQHHELMSSIQNIAKQARIVSVNAQIVAARAGEVGREF 207 Query: 205 SVVAGVLSNITTEIDDLVRAALSGAA 230 +VVAG L+NIT +ID+LVR A+ A+ Sbjct: 208 AVVAGELTNITAKIDELVRVAVGNAS 233 >ref|YP_001790196.1| methyl-accepting chemotaxis sensory transducer [Leptothrix cholodnii SP-6] gb|ACB33431.1| methyl-accepting chemotaxis sensory transducer [Leptothrix cholodnii SP-6] Length = 237 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/213 (57%), Positives = 155/213 (72%), Gaps = 6/213 (2%) Query: 25 LSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRG-S 83 LSGEVFG LINLSGRRRFTSQRLVLYA+LA+QG +GA++ +R+ALA F AH L+ G Sbjct: 25 LSGEVFGRLINLSGRRRFTSQRLVLYALLAAQGREGALQVSRDALAAFCEAHLLLIDGQG 84 Query: 84 DTVPGIFCEEVREAYF--GKLAGDA---QIVYFMNLAERTLNAIEDRLRDAPALLEELVR 138 ++PG+FC+E+R+AY+ G GD I F+ LA R AI APALL++LV Sbjct: 85 SSLPGVFCDELRQAYYATGPRGGDGGHDTIQAFIVLARRVHEAIAAGSVGAPALLDQLVE 144 Query: 139 ITTPLLGVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAG 198 TPLL VLNQIT VYE+ ++R A +KQL +M +IE I+ QA++V+FNA++VAA AG Sbjct: 145 RGTPLLAVLNQITQVYEDLARRQATQARKQLVDVMGEIEAISMQARIVAFNAQVVAAHAG 204 Query: 199 QAGKEFSVVAGVLSNITTEIDDLVRAALSGAAA 231 +AG EFSVVAG LS IT ID+LVR AL G+AA Sbjct: 205 KAGSEFSVVAGELSRITGRIDELVRDALRGSAA 237 >ref|YP_003674445.1| methyl-accepting chemotaxis sensory transducer [Methylotenera versatilis 301] gb|ADI29868.1| methyl-accepting chemotaxis sensory transducer [Methylotenera versatilis 301] Length = 222 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 104/202 (51%), Positives = 144/202 (71%) Query: 25 LSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTAREALALFRGAHTALVRGSD 84 ++ E FG LIN+SGR+R SQR++L L++ GH+ A+K AR+ L LFR +H ALV G+ Sbjct: 17 ITSETFGHLINISGRQRMLSQRIILNIFLSTHGHEDALKIARDDLQLFRDSHHALVIGNS 76 Query: 85 TVPGIFCEEVREAYFGKLAGDAQIVYFMNLAERTLNAIEDRLRDAPALLEELVRITTPLL 144 +PG+F E +R AY+ +L G + + F+NLAE+TLNA E R A LL+EL + P++ Sbjct: 77 EMPGVFFENLRLAYYSELDGHKKNLEFINLAEKTLNAYEANYRTAQGLLDELGLLAMPIV 136 Query: 145 GVLNQITTVYEEQSKRHAVLMKKQLRGIMTDIETIAKQAKMVSFNARIVAARAGQAGKEF 204 +LNQIT VYE +SK L +K+ R +M DI+ IAKQAK+V+ NA+I AARAG+ G+EF Sbjct: 137 KLLNQITLVYETESKEFVKLEQKKRRYLMNDIQNIAKQAKIVAVNAQISAARAGEIGREF 196 Query: 205 SVVAGVLSNITTEIDDLVRAAL 226 SVVA L+NIT +ID LV+ AL Sbjct: 197 SVVATELTNITEKIDSLVKTAL 218