BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0124.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_786404.1| membrane protein [Bordetella avium 197N] >gi|11...   156   9e-37
ref|YP_003979336.1| hypothetical protein AXYL_03301 [Achromobact...   153   7e-36
ref|YP_003774636.1| membrane protein [Herbaspirillum seropedicae...   147   6e-34
ref|YP_004415558.1| hypothetical protein PT7_0394 [Pusillimonas ...   141   3e-32
ref|ZP_06687966.1| conserved hypothetical protein [Achromobacter...   141   3e-32

>ref|YP_786404.1| membrane protein [Bordetella avium 197N]
 emb|CAJ49496.1| putative membrane protein [Bordetella avium 197N]
          Length = 125

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 99/122 (81%)

Query: 1   MSERLLVILAGLNMFIAVGAGAFGAHGLKQILDADMLAIWQTAVIYQMVHALGMFAVALL 60
           M +R  +ILA LNM IAVGAGAFGAHGLK++LDADMLA+WQT V+YQ+VHALG+FAVA L
Sbjct: 1   MPDRPFIILAALNMIIAVGAGAFGAHGLKRVLDADMLAVWQTGVLYQLVHALGLFAVAWL 60

Query: 61  MPKFGPAILGWAGSAMFIGIVIFSGSLYVLALSGVRFLGAITPIGGLAFLAGWLLVAWAA 120
             ++  A+L  AG  MF GIV+FSGSLY+LA++G R LGAITP+GG+AFL  W L+AWA 
Sbjct: 61  TTRYNGALLPLAGWLMFAGIVLFSGSLYLLAVTGTRLLGAITPLGGVAFLLSWALIAWAV 120

Query: 121 YK 122
            +
Sbjct: 121 IR 122


>ref|YP_003979336.1| hypothetical protein AXYL_03301 [Achromobacter xylosoxidans A8]
 gb|ADP16621.1| hypothetical protein AXYL_03301 [Achromobacter xylosoxidans A8]
          Length = 125

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 101/124 (81%)

Query: 1   MSERLLVILAGLNMFIAVGAGAFGAHGLKQILDADMLAIWQTAVIYQMVHALGMFAVALL 60
           M++R L ILA LN+ +AVGAGAFGAHGLK++L  ++L++WQT V+Y ++HALG+F VALL
Sbjct: 1   MTDRQLTILAALNLMVAVGAGAFGAHGLKRMLTPELLSVWQTGVLYHLIHALGLFVVALL 60

Query: 61  MPKFGPAILGWAGSAMFIGIVIFSGSLYVLALSGVRFLGAITPIGGLAFLAGWLLVAWAA 120
             ++G  +L  AG  MF+GIV+FSGSLYVL+L+G  +LGA+TP GG+AFLA W +VA AA
Sbjct: 61  GARYGSPLLSAAGVVMFVGIVLFSGSLYVLSLTGTHWLGAVTPFGGVAFLASWAMVALAA 120

Query: 121 YKAQ 124
           Y+AQ
Sbjct: 121 YRAQ 124


>ref|YP_003774636.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62728.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 126

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 86/109 (78%)

Query: 1   MSERLLVILAGLNMFIAVGAGAFGAHGLKQILDADMLAIWQTAVIYQMVHALGMFAVALL 60
           M ER L+ L  LNMFIAVG GAFGAHGLK+++  +MLAIW TAV YQ++HALGM AVALL
Sbjct: 1   MKERTLIALGALNMFIAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL 60

Query: 61  MPKFGPAILGWAGSAMFIGIVIFSGSLYVLALSGVRFLGAITPIGGLAF 109
           MP+ G A L WAG  M  GIV+FSGSLY+LAL+G R LGAITP GG+ F
Sbjct: 61  MPRLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGF 109


>ref|YP_004415558.1| hypothetical protein PT7_0394 [Pusillimonas sp. T7-7]
 gb|AEC18934.1| hypothetical protein PT7_0394 [Pusillimonas sp. T7-7]
          Length = 123

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 94/123 (76%)

Query: 1   MSERLLVILAGLNMFIAVGAGAFGAHGLKQILDADMLAIWQTAVIYQMVHALGMFAVALL 60
           M++R L+I+A L + + VGAGAFGAHGLK+++  DML++WQTAV+YQ++H LGM  +A L
Sbjct: 1   MTDRQLIIVAALTLLVGVGAGAFGAHGLKRMITPDMLSVWQTAVLYQLIHGLGMLVIAAL 60

Query: 61  MPKFGPAILGWAGSAMFIGIVIFSGSLYVLALSGVRFLGAITPIGGLAFLAGWLLVAWAA 120
             +F   +L  +GS MF GI+IFSGSLY L L+  ++LGAITPIGG AFL  W +VA AA
Sbjct: 61  GSRFASPLLSLSGSVMFAGILIFSGSLYALVLTNTKWLGAITPIGGAAFLIAWAMVAVAA 120

Query: 121 YKA 123
           Y++
Sbjct: 121 YRS 123


>ref|ZP_06687966.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gb|EFF75067.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 125

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 102/124 (82%)

Query: 1   MSERLLVILAGLNMFIAVGAGAFGAHGLKQILDADMLAIWQTAVIYQMVHALGMFAVALL 60
           M++R L ILA LN+ +AVGAGAFGAHGLK++L  ++L++WQT V+Y ++HA+G+F +ALL
Sbjct: 1   MTDRQLTILAALNLMVAVGAGAFGAHGLKRMLSPELLSVWQTGVLYHLIHAMGLFVIALL 60

Query: 61  MPKFGPAILGWAGSAMFIGIVIFSGSLYVLALSGVRFLGAITPIGGLAFLAGWLLVAWAA 120
             +FG  +L  AG  MF+GIV+FSGSLY L+L+GV +LGA+TP+GG+AFLA W +VA AA
Sbjct: 61  GARFGSPLLSAAGVVMFVGIVLFSGSLYTLSLTGVHWLGAVTPLGGVAFLAAWAMVALAA 120

Query: 121 YKAQ 124
           Y+AQ
Sbjct: 121 YRAQ 124