BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0120.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002824551.1| hypothetical protein NGR_b23550 [Sinorhizobi... 327 1e-87 ref|YP_002281801.1| xylose isomerase [Rhizobium leguminosarum bv... 323 2e-86 ref|YP_001978901.1| hypothetical protein RHECIAT_CH0002772 [Rhiz... 321 7e-86 gb|EGE57427.1| hypothetical protein RHECNPAF_4310051 [Rhizobium ... 320 2e-85 ref|ZP_08666818.1| hypothetical protein PaTRP_18705 [Paracoccus ... 318 9e-85 >ref|YP_002824551.1| hypothetical protein NGR_b23550 [Sinorhizobium fredii NGR234] gb|ACP23798.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 278 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 151/277 (54%), Positives = 202/277 (72%) Query: 4 MQQLRVYQSLWAMERRRPDGHEWTLEQKLAMIRDAGFDGAGVRFFDRDYAREVTAFLREH 63 MQ L ++QSLWAMERR DGHE +L++ +AMI AGFDG + +R + +R Sbjct: 1 MQTLLIFQSLWAMERRHTDGHERSLQENIAMISGAGFDGISAHYTNRRDVLRLDETIRGT 60 Query: 64 GMSWQAQCYPRSVDELKPIIEHVQEFGADHINLQADVRPYTLDECIPYIEGWRRLADDAG 123 G+ + C+PRSV++L+ +E EF HINLQ D+RP +++C+P ++GW RLA+DAG Sbjct: 61 GLKIEGVCFPRSVEDLRLPLELAAEFPVSHINLQPDIRPRRVEDCLPLLDGWMRLAEDAG 120 Query: 124 IALHIETHRDRMTTDLFFTLQLLDRFPDLRLTADLSHYVVGREFAWPISDENHALMHRII 183 I + IETHRDRMTTDLFFTL LLDR PDL L ADLSH++VGREFA+P+ +ENHA++ RI+ Sbjct: 121 IPVFIETHRDRMTTDLFFTLDLLDRRPDLPLLADLSHFLVGREFAFPVDEENHAMIRRIL 180 Query: 184 DNAWGFHGRVASREQIQLQLAFPQHQQWLQLFMQWWEYGFRSWRRRAPADGVLTFLCELG 243 NA FHGRVASREQ+Q+++++P H+ W+ LF++WW YGFR WR RA D L F CELG Sbjct: 181 RNARAFHGRVASREQVQIEISYPHHRPWVDLFLEWWRYGFRDWRIRADGDAELIFTCELG 240 Query: 244 PPEYAMTGADGYELSDRWQEAGVMKDSVRALWQACAD 280 P YA+TG DG + +DRW EA +++ VR LW A A+ Sbjct: 241 PKPYAITGRDGNDTTDRWAEALLLRQMVRELWAATAE 277 >ref|YP_002281801.1| xylose isomerase [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI55575.1| Xylose isomerase domain protein TIM barrel [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 277 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 150/277 (54%), Positives = 200/277 (72%) Query: 3 IMQQLRVYQSLWAMERRRPDGHEWTLEQKLAMIRDAGFDGAGVRFFDRDYAREVTAFLRE 62 + Q+L ++QSLWAMERR DG E TL++ +AMI +AGFDG + +R + +R Sbjct: 1 MTQRLLIFQSLWAMERRHTDGLERTLDENIAMISEAGFDGISAHYTNRGDVVALNEAIRG 60 Query: 63 HGMSWQAQCYPRSVDELKPIIEHVQEFGADHINLQADVRPYTLDECIPYIEGWRRLADDA 122 G+ + C+PR +D+L+ +E EF HINLQ D+RP +D C+P ++GW RLA+DA Sbjct: 61 TGLKIEGVCFPRCIDDLRLPLELAAEFPVSHINLQPDIRPRRVDACLPLLDGWMRLAEDA 120 Query: 123 GIALHIETHRDRMTTDLFFTLQLLDRFPDLRLTADLSHYVVGREFAWPISDENHALMHRI 182 GI + IETHRDRMT DLFFTL LLD+ PDL L ADLSH++VGREFA+P+ +ENHAL+ RI Sbjct: 121 GIPVFIETHRDRMTADLFFTLDLLDQRPDLPLLADLSHFLVGREFAFPVDEENHALIRRI 180 Query: 183 IDNAWGFHGRVASREQIQLQLAFPQHQQWLQLFMQWWEYGFRSWRRRAPADGVLTFLCEL 242 ++NA FHGRVASREQ+Q++++FP H+ W+ LF++WWEYGFR WR RA D L F CEL Sbjct: 181 LENAHAFHGRVASREQVQIEISFPHHRPWVDLFLEWWEYGFRHWRFRAAEDAELVFTCEL 240 Query: 243 GPPEYAMTGADGYELSDRWQEAGVMKDSVRALWQACA 279 GP YA+TG DG + +DRW EA V++ + LW A A Sbjct: 241 GPKPYAITGRDGNDSTDRWAEALVLRQLMHELWAATA 277 >ref|YP_001978901.1| hypothetical protein RHECIAT_CH0002772 [Rhizobium etli CIAT 652] gb|ACE91723.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 277 Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 151/277 (54%), Positives = 200/277 (72%) Query: 3 IMQQLRVYQSLWAMERRRPDGHEWTLEQKLAMIRDAGFDGAGVRFFDRDYAREVTAFLRE 62 + Q+L ++QSLWAMERR DG E TL++ +AMIR AGFDG + +R + +R Sbjct: 1 MTQKLLIFQSLWAMERRHTDGFERTLDENIAMIRQAGFDGISAHYTNRRGVVVLNETIRG 60 Query: 63 HGMSWQAQCYPRSVDELKPIIEHVQEFGADHINLQADVRPYTLDECIPYIEGWRRLADDA 122 G+ +A C+PRSV++L+ +E F HINLQ D+R ++ C+P ++GW RLA+DA Sbjct: 61 SGLKIEAVCFPRSVEDLRLPLELAAAFPVSHINLQPDIRLRRVEACLPLLDGWMRLAEDA 120 Query: 123 GIALHIETHRDRMTTDLFFTLQLLDRFPDLRLTADLSHYVVGREFAWPISDENHALMHRI 182 GI + IETHRDRMTTDLFFTL LL+R P+L L ADLSH++VGREFA+P+ +ENHA + RI Sbjct: 121 GIPVFIETHRDRMTTDLFFTLDLLERRPELPLLADLSHFLVGREFAFPVDEENHAHIRRI 180 Query: 183 IDNAWGFHGRVASREQIQLQLAFPQHQQWLQLFMQWWEYGFRSWRRRAPADGVLTFLCEL 242 + NA FHGR+ASREQ+Q+++AFP H+ W+ LF+QWW+YGFR WR RA D L F CEL Sbjct: 181 LQNARAFHGRIASREQVQIEIAFPHHRPWVDLFLQWWDYGFRHWRSRAADDAELVFTCEL 240 Query: 243 GPPEYAMTGADGYELSDRWQEAGVMKDSVRALWQACA 279 GP YA+TG DG + +DRW EA V++ VR LW A A Sbjct: 241 GPKPYAITGRDGNDSTDRWAEALVLRQMVRELWDALA 277 >gb|EGE57427.1| hypothetical protein RHECNPAF_4310051 [Rhizobium etli CNPAF512] Length = 277 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/277 (54%), Positives = 199/277 (71%) Query: 3 IMQQLRVYQSLWAMERRRPDGHEWTLEQKLAMIRDAGFDGAGVRFFDRDYAREVTAFLRE 62 + Q+L ++QSLWAMERR DG E TL++ +AMIR AGFDG + +R + +R+ Sbjct: 1 MTQKLLIFQSLWAMERRHTDGFERTLDENIAMIRQAGFDGISAHYTNRRDVVVLNETIRD 60 Query: 63 HGMSWQAQCYPRSVDELKPIIEHVQEFGADHINLQADVRPYTLDECIPYIEGWRRLADDA 122 G+ +A C+PRSV++L+ +E F HINLQ D+R ++ C+P ++GW RLA+DA Sbjct: 61 SGLKIEAVCFPRSVEDLRLPLELAAAFPVSHINLQPDIRLRRVEACLPLLDGWMRLAEDA 120 Query: 123 GIALHIETHRDRMTTDLFFTLQLLDRFPDLRLTADLSHYVVGREFAWPISDENHALMHRI 182 GI + IETHRDRMTTDLFFTL LL++ PDL L ADLSH++VGREFA+P+ +ENHA + RI Sbjct: 121 GIPVFIETHRDRMTTDLFFTLDLLEQRPDLPLLADLSHFLVGREFAFPVDEENHAHIRRI 180 Query: 183 IDNAWGFHGRVASREQIQLQLAFPQHQQWLQLFMQWWEYGFRSWRRRAPADGVLTFLCEL 242 + NA FHGRVASREQ+Q+++ FP H+ W+ LF+QWW+YGFR WR RA D L F CEL Sbjct: 181 LQNARAFHGRVASREQVQIEITFPHHRPWVDLFLQWWDYGFRHWRSRAADDAELVFTCEL 240 Query: 243 GPPEYAMTGADGYELSDRWQEAGVMKDSVRALWQACA 279 GP YA+TG DG + +DRW EA ++ VR LW A A Sbjct: 241 GPKPYAITGRDGNDSTDRWAEALALRQMVRELWDALA 277 >ref|ZP_08666818.1| hypothetical protein PaTRP_18705 [Paracoccus sp. TRP] Length = 287 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 146/276 (52%), Positives = 196/276 (71%) Query: 4 MQQLRVYQSLWAMERRRPDGHEWTLEQKLAMIRDAGFDGAGVRFFDRDYAREVTAFLREH 63 MQ+L V+QSLWAMERR DGHE +L++ +A+I DAGFDG + R + + L Sbjct: 1 MQRLLVFQSLWAMERRHTDGHERSLDENIALILDAGFDGISAHYTSRAEVQRLNLTLSGS 60 Query: 64 GMSWQAQCYPRSVDELKPIIEHVQEFGADHINLQADVRPYTLDECIPYIEGWRRLADDAG 123 G+ + C+PR+VD+L+ +E EF H+NLQ D+R +++C+P ++GW LA+DAG Sbjct: 61 GLGVEGVCFPRTVDDLRLPLELAAEFPVSHLNLQPDIRLRRVEDCLPLLDGWLCLAEDAG 120 Query: 124 IALHIETHRDRMTTDLFFTLQLLDRFPDLRLTADLSHYVVGREFAWPISDENHALMHRII 183 I + IETHRDRMTTDLFFTL LL+ P+L L ADLSH++VGREFA+P+S ENH L+ RI+ Sbjct: 121 IPVLIETHRDRMTTDLFFTLDLLEARPELPLLADLSHFLVGREFAYPVSAENHTLIQRIL 180 Query: 184 DNAWGFHGRVASREQIQLQLAFPQHQQWLQLFMQWWEYGFRSWRRRAPADGVLTFLCELG 243 N W FHGRVASREQ+Q+++++P H+ W+ LF QWW GFR WR RA A L F CELG Sbjct: 181 RNTWAFHGRVASREQVQIEISYPHHRPWVDLFRQWWREGFRDWRSRAAAGAALVFTCELG 240 Query: 244 PPEYAMTGADGYELSDRWQEAGVMKDSVRALWQACA 279 P YA+TG DG + +DRW E+ +++D VR LW A Sbjct: 241 PKPYAITGPDGNDTTDRWNESLMLRDMVRTLWAETA 276