BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0118.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775330.1| LacI family transcription regulator protein ... 462 e-128 ref|ZP_02884053.1| transcriptional regulator, LacI family [Burkh... 282 7e-74 gb|AEA85865.1| LacI family transcriptional regulator [Pseudomona... 280 2e-73 ref|YP_550225.1| LacI family transcription regulator [Polaromona... 279 5e-73 ref|YP_004231873.1| LacI family transcriptional regulator [Burkh... 278 1e-72 >ref|YP_003775330.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63422.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/330 (70%), Positives = 268/330 (81%), Gaps = 1/330 (0%) Query: 13 PARAVTKEDVARVAGVSHITVSRVINSPDKVAPATREKVQAEITRMGYIPNLLAGGLASR 72 P RAVTKEDVAR AGVSHITVSRVINSP+KV+PATRE+V+A I MGYIPNLLAGGLASR Sbjct: 11 PTRAVTKEDVARAAGVSHITVSRVINSPEKVSPATRERVEAFIASMGYIPNLLAGGLASR 70 Query: 73 RTRIVAAVVPTIGHSIFAETVRGMSEYLMAHGYQLLLGQSDYSEDIETRLVEAFIGRRVD 132 RTRIVAA+VPTI HSIFAET+RG+SE L GYQLLLGQ++YSE+ ET LVE FIGRRVD Sbjct: 71 RTRIVAAIVPTISHSIFAETLRGLSEQLCMQGYQLLLGQTNYSEEAETGLVEVFIGRRVD 130 Query: 133 GLVLTGVQHTPATLQRLKTAGIPVVETWDLTSEPIDMLAGFSNYDAGAAMGDYLVEQGYR 192 GLVLTGVQH+P T QRLK AGIPVVETWDLT PIDMLAGF N+ AG AMGDYL ++GYR Sbjct: 131 GLVLTGVQHSPMTRQRLKAAGIPVVETWDLTDTPIDMLAGFDNHAAGRAMGDYLYQKGYR 190 Query: 193 RIAFVGGEDPRGVARLAGLSAALKRHRLHAPVRITASPGSFLQGGREAMVTLLEQHRDVD 252 R+AFVGG+DPRG+AR+AGL +L+ H PV + G+FLQ GREA+ LL QH +VD Sbjct: 191 RMAFVGGDDPRGMARVAGLRESLRHHGAAEPVHLVMPMGAFLQAGREAIGRLLTQHPEVD 250 Query: 253 AAFFSNDVIAAGAVLECDRRKVRIPQDIAIAGFANLDIASEINPPLTTVHVSSHRIGETA 312 AAFFSNDVIAAGA LEC RR + +P IA+AGFANL+IA+E+ P LTTV +S+H+IG TA Sbjct: 251 AAFFSNDVIAAGAALECARRGIAVPGRIALAGFANLEIATEVLPALTTVQISAHQIGLTA 310 Query: 313 ARMLLARLGGKDAEADTVSDLGFSIVRRGS 342 A MLL R G D V DLG+SI+ R S Sbjct: 311 AEMLLTRFDG-DPLDQAVHDLGYSILERDS 339 >ref|ZP_02884053.1| transcriptional regulator, LacI family [Burkholderia graminis C4D1M] gb|EDT10713.1| transcriptional regulator, LacI family [Burkholderia graminis C4D1M] Length = 355 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 213/333 (63%), Gaps = 3/333 (0%) Query: 11 GGPARAVTKEDVARVAGVSHITVSRVINSPDKVAPATREKVQAEITRMGYIPNLLAGGLA 70 GGP + + DVA AGV+ ITVSRV NSP+ VAP T E+V+ + ++GY+PN LAGGL+ Sbjct: 26 GGP-KGLRITDVAAQAGVAPITVSRVFNSPETVAPETLERVRQVVQKLGYVPNRLAGGLS 84 Query: 71 SRRTRIVAAVVPTIGHSIFAETVRGMSEYLMAHGYQLLLGQSDYSEDIETRLVEAFIGRR 130 S R+R++AA+VPTI HS+F+ET++ SE + GYQ+LL S Y + E L++A + RR Sbjct: 85 SSRSRLIAAIVPTIAHSLFSETIQVFSETMSRAGYQVLLALSGYDDSSEEVLLDAVLSRR 144 Query: 131 VDGLVLTGVQHTPATLQRLKTAGIPVVETWDLTSEPIDMLAGFSNYDAGAAMGDYLVEQG 190 +G++LTGV HT + +RL GIP+VETWD+T PIDML GFS+Y G A+ ++ +++ Sbjct: 145 PEGVLLTGVAHTDSLRERLANVGIPIVETWDMTDRPIDMLVGFSHYQIGVAVAEHFLQRN 204 Query: 191 YRRIAFVGGEDPRGVARLAGLSAALKRHRLHAPVRITASPGSFLQGGREAMVTLLEQHRD 250 R+ V D R +AR G L + + + +P S + G+ A+ L+EQ D Sbjct: 205 VRKPGLVSANDERALARRRGFRERLAQAGISGIAEVLVAPPSSVALGKAALPRLIEQAPD 264 Query: 251 VDAAFFSNDVIAAGAVLECDRRKVRIPQDIAIAGFANLDIASEINPPLTTVHVSSHRIGE 310 +DA F +D++A G + + + +P +AI GF +L+ A+E P LT+VHV RIG Sbjct: 265 IDAVFCGSDLLAIGTLNAARQMGLSVPSRLAICGFGDLEFATETTPQLTSVHVDGTRIGV 324 Query: 311 TAARMLLARLGGKDAEADTVSDLGFSIVRRGSA 343 TAAR LL RL G V+D+GF +VRRGS+ Sbjct: 325 TAARCLLDRLSGSG--QSKVTDVGFEVVRRGSS 355 >gb|AEA85865.1| LacI family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 341 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 158/345 (45%), Positives = 213/345 (61%), Gaps = 6/345 (1%) Query: 1 MAKRITSQEDGGPARAVTKEDVARVAGVSHITVSRVINSPDKVAPATREKVQAEITRMGY 60 MAKR +S G T DVARVAGVS ITVSR + P+ VAPATR +V + Y Sbjct: 1 MAKRCSSSRAG---TTPTLIDVARVAGVSPITVSRTLGRPEAVAPATRRRVLEAVRATAY 57 Query: 61 IPNLLAGGLASRRTRIVAAVVPTIGHSIFAETVRGMSEYLMAHGYQLLLGQSDYSEDIET 120 +PNL AG LAS R+R+VA +PTI +SIFA+TV+ ++E L GYQ LLG + YS + E Sbjct: 58 VPNLAAGSLASSRSRLVAIFLPTIANSIFADTVQALTERLAVAGYQTLLGLTGYSAEQEE 117 Query: 121 RLVEAFIGRRVDGLVLTGVQHTPATLQRLKTAGIPVVETWDLTSEPIDMLAGFSNYDAGA 180 RL+EA +GRR DG+VLTG +H+ + +RL GIP+VE WDL ++P+DML GFS+ GA Sbjct: 118 RLLEAVLGRRPDGIVLTGTEHSQVSRERLARVGIPLVEAWDLCAKPLDMLVGFSHEAVGA 177 Query: 181 AMGDYLVEQGYRRIAFVGGEDPRGVARLAGLSAALKRHRLHAPVRITASPG-SFLQGGRE 239 A+ YL+ +GYRR++ V +DPRG+ R L A L H + AP+ P + L GRE Sbjct: 178 AVAQYLLGKGYRRVSLVSLDDPRGLRRCNSLIATLAGHGV-APLATALLPAPATLAVGRE 236 Query: 240 AMVTLLEQHRDVDAAFFSNDVIAAGAVLECDRRKVRIPQDIAIAGFANLDIASEINPPLT 299 + LL+ + S+D +A G + E R VR+P D+A+ GF +L A+ +PPL+ Sbjct: 237 GLARLLDAGAAGEVVVCSSDTLAQGVLAEAASRGVRVPDDLAVMGFGDLSCAAHCHPPLS 296 Query: 300 TVHVSSHRIGETAARMLLARLGGKD-AEADTVSDLGFSIVRRGSA 343 TV + RIG A LLAR+ A D+GF +V RGSA Sbjct: 297 TVRIDGPRIGNAVAEALLARIAEPALARTPLRLDVGFEVVERGSA 341 >ref|YP_550225.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE45327.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 347 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 150/327 (45%), Positives = 209/327 (63%), Gaps = 1/327 (0%) Query: 16 AVTKEDVARVAGVSHITVSRVINSPDKVAPATREKVQAEITRMGYIPNLLAGGLASRRTR 75 AVT DVA++AGV+ IT SR +N+P +V+ +KV + R GY+PN LAGGLAS R+R Sbjct: 21 AVTLHDVAKLAGVAPITASRALNTPTQVSAEVLKKVTDAVQRTGYVPNRLAGGLASSRSR 80 Query: 76 IVAAVVPTIGHSIFAETVRGMSEYLMAHGYQLLLGQSDYSEDIETRLVEAFIGRRVDGLV 135 +VAAVVPT+ +F ETV+ +++ L GYQL+LGQS Y + E L+EA IGRR DG+V Sbjct: 81 LVAAVVPTLNGPVFLETVQALTDALAEQGYQLMLGQSGYVDSREDALLEAIIGRRPDGIV 140 Query: 136 LTGVQHTPATLQRLKTAGIPVVETWDLTSEPIDMLAGFSNYDAGAAMGDYLVEQGYRRIA 195 LTG+ H+P +RL AGIPVVETWDLT P+DML GFS+ D G A+ D+L +G RR+A Sbjct: 141 LTGIMHSPEGRKRLLAAGIPVVETWDLTPTPLDMLVGFSHVDVGRAVVDFLYARGRRRLA 200 Query: 196 FVGGEDPRGVARLAGLSAALKRHRLHAPVRITASPGSFLQGGREAMVTLLEQHRDVDAAF 255 V G+D R R AA + L +T + + GR A+ L+ D+DA F Sbjct: 201 IVAGDDERSTRRHQAFQAAARAAGLPEVRMVTVPAPTTAKSGRSALAELMRDAGDIDAVF 260 Query: 256 FSNDVIAAGAVLECDRRKVRIPQDIAIAGFANLDIASEINPPLTTVHVSSHRIGETAARM 315 S+D++A G +++ + +P +AI GF +L+ A+++NP LTTV + IG AAR Sbjct: 261 CSSDLLALGVLMQAQASGIAVPGQLAIVGFGDLEFAADLNPALTTVRIDGTAIGRQAARF 320 Query: 316 LLARLGGKDAEADTVSDLGFSIVRRGS 342 ++ R G+ E V D+GF+IV RGS Sbjct: 321 IVERAEGRPVEPRVV-DIGFTIVERGS 346 >ref|YP_004231873.1| LacI family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX58813.1| transcriptional regulator, LacI family [Burkholderia sp. CCGE1001] Length = 355 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/332 (43%), Positives = 213/332 (64%), Gaps = 3/332 (0%) Query: 11 GGPARAVTKEDVARVAGVSHITVSRVINSPDKVAPATREKVQAEITRMGYIPNLLAGGLA 70 GGP + + DVA AGV+ ITVSRV NSP+ VAP T E+V+ + ++GY+PN LAGGL+ Sbjct: 26 GGP-KGLRITDVATQAGVAPITVSRVFNSPETVAPETLERVRQVVQKLGYVPNRLAGGLS 84 Query: 71 SRRTRIVAAVVPTIGHSIFAETVRGMSEYLMAHGYQLLLGQSDYSEDIETRLVEAFIGRR 130 S R+R++AA+VPTI HS+F++T++ SE + GYQ+LL S Y E L++A + RR Sbjct: 85 SSRSRLIAAIVPTIAHSLFSDTIQVFSEAMSRAGYQVLLALSGYDGSSEEALLDAVLSRR 144 Query: 131 VDGLVLTGVQHTPATLQRLKTAGIPVVETWDLTSEPIDMLAGFSNYDAGAAMGDYLVEQG 190 +G++LTGV HT + RL GIP+VETWD+T +PIDML GFS+Y G A+ ++ ++ Sbjct: 145 PEGVLLTGVAHTDSLRARLANVGIPIVETWDMTEQPIDMLVGFSHYQTGVAVAEHFLQTN 204 Query: 191 YRRIAFVGGEDPRGVARLAGLSAALKRHRLHAPVRITASPGSFLQGGREAMVTLLEQHRD 250 R+ A V D R +AR G L R + + +P S + G+ A+ L+++ R Sbjct: 205 RRKPALVSANDARALARRRGFRERLARAGIDDIPEVLVAPPSSVAIGKAALPRLIQEARH 264 Query: 251 VDAAFFSNDVIAAGAVLECDRRKVRIPQDIAIAGFANLDIASEINPPLTTVHVSSHRIGE 310 +DA F +D++A GA+ + + +P +AI GF +L+ A+E P LT+VHV RIG Sbjct: 265 IDAVFCGSDLLAIGALSAARQLALSVPSQLAICGFGDLEFATETTPQLTSVHVDGTRIGL 324 Query: 311 TAARMLLARLGGKDAEADTVSDLGFSIVRRGS 342 TAAR LL RL G + + V+D+GF I+RR + Sbjct: 325 TAARCLLDRLAG--SAQNRVTDVGFEIIRRAT 354