BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0113.p (137 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774643.1| biopolymer transport ExbD/TolR protein [Herb... 215 2e-54 ref|YP_001354155.1| biopolymer transport protein TolR [Janthinob... 203 7e-51 ref|YP_004754052.1| Tol biopolymer transport system, TolR protei... 189 1e-46 ref|ZP_08274764.1| Tol biopolymer transport system, TolR protein... 184 3e-45 ref|YP_001100657.1| putative biopolymer transport protein ExbD/T... 183 1e-44 >ref|YP_003774643.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] gb|ADJ62735.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 144 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 104/139 (74%), Positives = 125/139 (89%), Gaps = 2/139 (1%) Query: 1 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVAAPVNDPSVINLPTAGKSTVPPSEYIEIA 60 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVA P+ +PSVINLPTAGKST PPS+YIEIA Sbjct: 6 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDYIEIA 65 Query: 61 LKPDAKATIKVNGPKRG--ETQTASGRPDLAQKLQALHADSPDMPVMISADKEIKYDEVV 118 LKP+++ATI++NGPK G + +T +G+ DL+++L+ LH D+P++ VMISADK+IKYDEVV Sbjct: 66 LKPNSQATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVV 125 Query: 119 QVIAAAKKLGIARVGLATK 137 QVI+ AKK GIARVGLATK Sbjct: 126 QVISEAKKQGIARVGLATK 144 >ref|YP_001354155.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] gb|ABR89292.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] Length = 146 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 100/139 (71%), Positives = 116/139 (83%), Gaps = 2/139 (1%) Query: 1 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVAAPVNDPSVINLPTAGKSTVPPSEYIEIA 60 MRGGR RKFKSEINVVPYIDVMLVLL+IFMVAAP+ +P VINLP A KST+PP+EYI I Sbjct: 8 MRGGRTRKFKSEINVVPYIDVMLVLLVIFMVAAPLTNPGVINLPNAAKSTLPPTEYIRID 67 Query: 61 LKPDAKATIKVNGPKRGE--TQTASGRPDLAQKLQALHADSPDMPVMISADKEIKYDEVV 118 L+PD AT+ + G K G+ T+TA+ R LAQKLQA+HAD P++PVMISADK IKYDEV+ Sbjct: 68 LRPDTSATLTIAGSKGGKAPTETAANRAALAQKLQAIHADRPELPVMISADKNIKYDEVI 127 Query: 119 QVIAAAKKLGIARVGLATK 137 Q I+ AKKLGI RVGLATK Sbjct: 128 QAISEAKKLGIERVGLATK 146 >ref|YP_004754052.1| Tol biopolymer transport system, TolR protein [Collimonas fungivorans Ter331] gb|AEK63229.1| Tol biopolymer transport system, TolR protein [Collimonas fungivorans Ter331] Length = 144 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/138 (67%), Positives = 111/138 (80%), Gaps = 1/138 (0%) Query: 1 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVAAPVNDPSVINLPTAGKSTVPPSEYIEIA 60 MRGGR RKFK++INVVPYIDVM+VLL+IFMV+AP+ +PSVINLP A KS PP+EYIEI Sbjct: 7 MRGGRTRKFKADINVVPYIDVMMVLLVIFMVSAPLTNPSVINLPNAAKSATPPTEYIEIT 66 Query: 61 LKPDAKATIKVNGPKRGETQTAS-GRPDLAQKLQALHADSPDMPVMISADKEIKYDEVVQ 119 LKP ++++N K G ++ S R L QKLQ LHAD PDMPVMISADK+IKYDEV++ Sbjct: 67 LKPGDLTSVRINSQKSGTSKAESVPRNGLKQKLQLLHADKPDMPVMISADKDIKYDEVIK 126 Query: 120 VIAAAKKLGIARVGLATK 137 VI+ AK LGI RVGLATK Sbjct: 127 VISEAKMLGINRVGLATK 144 >ref|ZP_08274764.1| Tol biopolymer transport system, TolR protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31766.1| Tol biopolymer transport system, TolR protein [Oxalobacteraceae bacterium IMCC9480] Length = 144 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 89/133 (66%), Positives = 109/133 (81%), Gaps = 2/133 (1%) Query: 7 RKFKSEINVVPYIDVMLVLLIIFMVAAPVNDPSVINLPTAGKSTVPPSEYIEIALKPDAK 66 RKFK++INVVPYIDVMLVLL+IFMVAAP+ +P VINLPTA KS++PPSEYI+I+LKPDA Sbjct: 11 RKFKADINVVPYIDVMLVLLVIFMVAAPITNPGVINLPTAEKSSLPPSEYIQISLKPDAA 70 Query: 67 ATIKVNGPKR--GETQTASGRPDLAQKLQALHADSPDMPVMISADKEIKYDEVVQVIAAA 124 +TI +NG K QT S R DL ++L+ALH +PDMPVMIS DKE +Y+EV+ +I+ A Sbjct: 71 STIGINGQKNTAANQQTTSSRKDLLERLKALHEANPDMPVMISGDKESRYEEVISLISEA 130 Query: 125 KKLGIARVGLATK 137 KK GI RVGLATK Sbjct: 131 KKFGITRVGLATK 143 >ref|YP_001100657.1| putative biopolymer transport protein ExbD/TolR; putative TOLR-related transport transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62536.1| Putative biopolymer transport protein [Herminiimonas arsenicoxydans] Length = 146 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/139 (66%), Positives = 110/139 (79%), Gaps = 2/139 (1%) Query: 1 MRGGRPRKFKSEINVVPYIDVMLVLLIIFMVAAPVNDPSVINLPTAGKSTVPPSEYIEIA 60 MRGGR RKFKSEINVVPYIDVM+VLL+IFMV AP+ +PS I LP A KST+PP+EYI I Sbjct: 8 MRGGRNRKFKSEINVVPYIDVMMVLLVIFMVTAPMVNPSEIELPNAAKSTLPPTEYIRID 67 Query: 61 LKPDAKATIKVNGPKRGET--QTASGRPDLAQKLQALHADSPDMPVMISADKEIKYDEVV 118 LK DA AT+ V G K G +T + R +L +KLQ L AD+PD+ VMI+ADK IKYDEV+ Sbjct: 68 LKADASATVSVQGKKGGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADKNIKYDEVI 127 Query: 119 QVIAAAKKLGIARVGLATK 137 Q I+ AKKLGI+RVGLATK Sbjct: 128 QAISEAKKLGISRVGLATK 146