BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0107.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774648.1| transcription regulator protein [Herbaspiril...   258   2e-67
ref|YP_001100631.1| transcriptional regulator NrdR [Herminiimona...   249   8e-65
ref|YP_001354132.1| transcriptional regulator NrdR [Janthinobact...   248   2e-64
ref|YP_004754046.1| ribonucleotide reductase transcriptional reg...   229   1e-58
gb|EFV83162.1| transcriptional repressor nrdR [Achromobacter xyl...   209   2e-52

>ref|YP_003774648.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62740.1| transcription regulator, consists of a Zn-ribbon and ATP-cone
           domains protein [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  258 bits (660), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 138/147 (93%), Gaps = 1/147 (0%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           LDTR+SE+G +IRRRRRC NCDKRFTTYERIELT+PVIVKKNGSR+EFDP+KLR SLMLA
Sbjct: 14  LDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTLPVIVKKNGSRTEFDPAKLRGSLMLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVSAEAVD AIQSIQ+KLL SG REV+SGQ+GELVMRELKRLDKIAYIRFASVYKS
Sbjct: 74  LRKRPVSAEAVDMAIQSIQDKLLQSGEREVMSGQIGELVMRELKRLDKIAYIRFASVYKS 133

Query: 121 FEDVTEFQDAIAEVGQERKAAAKKRND 147
           FEDV EFQDAIAEVGQERK  AK+R+D
Sbjct: 134 FEDVAEFQDAIAEVGQERK-GAKRRDD 159


>ref|YP_001100631.1| transcriptional regulator NrdR [Herminiimonas arsenicoxydans]
 sp|A4G7M3.1|NRDR_HERAR RecName: Full=Transcriptional repressor NrdR
 emb|CAL62510.1| Transcriptional repressor NrdR [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  249 bits (637), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 133/143 (93%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           LDTRISEEGD+IRRRRRC +CDKRFTTYERIEL MPVIVKKNGSR++FDP KL+ASL LA
Sbjct: 14  LDTRISEEGDSIRRRRRCVSCDKRFTTYERIELAMPVIVKKNGSRTDFDPKKLQASLQLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVSAEAVDAAI  I++KLLSSG REVVSGQ+GELVMREL+RLDKIAYIRFASVYKS
Sbjct: 74  LRKRPVSAEAVDAAIHRIEQKLLSSGEREVVSGQIGELVMRELQRLDKIAYIRFASVYKS 133

Query: 121 FEDVTEFQDAIAEVGQERKAAAK 143
           FEDV EFQDAIAEVG+ERK  +K
Sbjct: 134 FEDVAEFQDAIAEVGRERKPPSK 156


>ref|YP_001354132.1| transcriptional regulator NrdR [Janthinobacterium sp. Marseille]
 sp|A6T0T5.1|NRDR_JANMA RecName: Full=Transcriptional repressor NrdR
 gb|ABR89909.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  248 bits (633), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 132/141 (93%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           LDTR+SEEGD+IRRRRRC +CDKRFTTYERIELTMPV+VKKNGSR++FDP KL+ SL LA
Sbjct: 14  LDTRVSEEGDSIRRRRRCTSCDKRFTTYERIELTMPVVVKKNGSRTDFDPKKLQGSLQLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVSAEAVDAAI  I++KLLSSG REV+SGQ+GELVMREL+RLDKIAYIRFASVYKS
Sbjct: 74  LRKRPVSAEAVDAAIHRIEQKLLSSGEREVISGQIGELVMRELQRLDKIAYIRFASVYKS 133

Query: 121 FEDVTEFQDAIAEVGQERKAA 141
           FEDV EFQDAIAEVG+ERK A
Sbjct: 134 FEDVAEFQDAIAEVGRERKPA 154


>ref|YP_004754046.1| ribonucleotide reductase transcriptional regulator NrdR [Collimonas
           fungivorans Ter331]
 gb|AEK63223.1| Ribonucleotide reductase transcriptional regulator NrdR [Collimonas
           fungivorans Ter331]
          Length = 155

 Score =  229 bits (583), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/133 (83%), Positives = 121/133 (90%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           LDTR+SEEGD+IRRRRRC  CDKRFTT+ERIEL MPVIVKKNGSR++FDP KLRASLMLA
Sbjct: 14  LDTRVSEEGDSIRRRRRCMQCDKRFTTFERIELAMPVIVKKNGSRTDFDPLKLRASLMLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVS EA+D A+Q I+EKLLSSG REV+SG VGELVMRELKRLDKIAYIRFASVYKS
Sbjct: 74  LRKRPVSVEALDEALQRIKEKLLSSGEREVLSGHVGELVMRELKRLDKIAYIRFASVYKS 133

Query: 121 FEDVTEFQDAIAE 133
           FEDV EFQ+ I E
Sbjct: 134 FEDVAEFQNMIEE 146


>gb|EFV83162.1| transcriptional repressor nrdR [Achromobacter xylosoxidans C54]
          Length = 159

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 119/134 (88%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +D+R+SEEGDAIRRRRRC +CDKRFTTYER+EL MP +VK+NGSRS++DP+KLRASL LA
Sbjct: 14  VDSRVSEEGDAIRRRRRCQSCDKRFTTYERVELAMPSVVKRNGSRSDYDPAKLRASLSLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVS E VDAA+  I+E+LL+SG REV SG +GELVM EL++LDK+AY+RFASVYKS
Sbjct: 74  LRKRPVSTEDVDAAVARIEEQLLASGLREVASGHIGELVMNELRKLDKVAYVRFASVYKS 133

Query: 121 FEDVTEFQDAIAEV 134
           FED+ EF +AI E+
Sbjct: 134 FEDIGEFVEAIREM 147