BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0095.p         (416 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum...   485   e-135
ref|YP_004754403.1| topoisomerase type IIAa [Collimonas fungivor...   479   e-133
ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. ...   477   e-132
ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenico...   475   e-132
ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacter...   473   e-131

>ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/236 (95%), Positives = 232/236 (98%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRY LVDGQGNFGSIDGDGAAAM
Sbjct: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKI+NELLADIEKETVDF PNYDGKEKEPSVLPTRIPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRTG 236
           NIPPHNITEVINGALH+L+N  CTIDELIEL+PAPDFPTGGIIYGVSGVRDGYRTG
Sbjct: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTG 236


>ref|YP_004754403.1| topoisomerase type IIAa [Collimonas fungivorans Ter331]
 gb|AEK63580.1| topoisomerase type IIAa [Collimonas fungivorans Ter331]
          Length = 888

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/236 (95%), Positives = 230/236 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGDGAAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDGAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRTG 236
           NIPPHN+TEVI+GALHVL NADCTIDELIE+IPAPDFPT GIIYGVSGVRDGYRTG
Sbjct: 181 NIPPHNLTEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTG 236


>ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/236 (94%), Positives = 229/236 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRTG 236
           NIPPHNITEVI+GALHVL NAD T+DELIE+IPAPDFPTGGIIYGVSGVRDGYRTG
Sbjct: 181 NIPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTG 236


>ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/236 (94%), Positives = 229/236 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKE+EPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRTG 236
           NIPPHNITEVI+GALHVL NA+ TIDELIE+IPAPDFPTGGIIYGVSGVRDGYRTG
Sbjct: 181 NIPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTG 236


>ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/236 (93%), Positives = 230/236 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLE+EMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RP+VKCARVVGEVMGKYHPHGD SIYDTLVRMAQDFSLRY LVDGQGNFGS+DGD AAAM
Sbjct: 61  RPYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIANE+LADI+K+TVDF PNYDGKEKEP+VLPTRIPNLLING+SGIAVGMAT
Sbjct: 121 RYTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRTG 236
           NIPPHNITEVI+GALHVL NADCTIDELIE+IPAPDFPT GIIYGVSGVRDGYRTG
Sbjct: 181 NIPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTG 236