BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0094.p         (243 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum...   480   e-134
ref|YP_004754403.1| topoisomerase type IIAa [Collimonas fungivor...   476   e-132
ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. ...   472   e-131
ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenico...   469   e-130
ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacter...   468   e-130

>ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/239 (94%), Positives = 232/239 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRY LVDGQGNFGSIDGDGAAAM
Sbjct: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKI+NELLADIEKETVDF PNYDGKEKEPSVLPTRIPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVINGALH+L+N  CTIDELIEL+PAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>ref|YP_004754403.1| topoisomerase type IIAa [Collimonas fungivorans Ter331]
 gb|AEK63580.1| topoisomerase type IIAa [Collimonas fungivorans Ter331]
          Length = 888

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/239 (94%), Positives = 230/239 (96%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGDGAAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDGAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHN+TEVI+GALHVL NADCTIDELIE+IPAPDFPT GIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNLTEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGR 239


>ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/239 (93%), Positives = 229/239 (95%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NAD T+DELIE+IPAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/239 (93%), Positives = 229/239 (95%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKE+EPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NA+ TIDELIE+IPAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/239 (92%), Positives = 230/239 (96%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLE+EMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RP+VKCARVVGEVMGKYHPHGD SIYDTLVRMAQDFSLRY LVDGQGNFGS+DGD AAAM
Sbjct: 61  RPYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIANE+LADI+K+TVDF PNYDGKEKEP+VLPTRIPNLLING+SGIAVGMAT
Sbjct: 121 RYTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NADCTIDELIE+IPAPDFPT GIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGR 239